b8dc49ef84
Rename members of the DNA profil strucuture to potentiel avoid a compile
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bug on windows cygwin
2016-06-28 15:13:30 +02:00
140f26977a
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2016-06-28 15:10:39 +02:00
d96cf37147
Remove a debug trace in the installer
2016-06-28 15:10:12 +02:00
20f1c1d337
Fixed a potential bug with the parsing of taxonomic paths when using
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obitaxonomy after obiaddtaxids on a general UNITE database
2016-06-16 16:40:27 +02:00
f32ca9e9fa
Patch the obitool url on metabarcoding.org
2016-05-27 14:37:58 +02:00
a06e79102d
Switch to version 1.2.6
2016-05-27 12:56:14 +02:00
0e2c486178
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2016-05-27 12:52:04 +02:00
950bae882b
Numbering version 1.2.5
2016-05-27 11:20:27 +02:00
683f3b5bbc
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2016-05-26 16:01:03 +02:00
5490144788
Fixed a bug in obitaxonomy sometimes triggering an error when adding a
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new taxon from a file. Also now checks if taxon already in taxonomy.
2016-05-26 15:58:48 +02:00
42a3f98495
for cython to version 0.23.5 the latest 0.23 version
2016-04-07 12:19:42 +02:00
c395d76231
patch a bug in the sequence counting of obiselect
2016-04-06 14:46:08 +02:00
b2d2346eb7
Set the Cython required version to 0.23 because of a bug in the 0.24
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version
2016-04-06 14:44:17 +02:00
ffb33f61a9
Switch to version 1.2.3
2016-04-04 18:49:10 +02:00
adbeac9684
Fixed major bug with -f UNITE_FULL option of obiaddtaxids
2016-04-04 16:36:05 +02:00
4aac47e639
Merge branch 'master' of git.metabarcoding.org:obitools/obitools
2016-03-30 16:35:49 +02:00
2028c69b3f
Fixed typo in obiaddtaxids documentation
2016-03-17 15:05:18 +01:00
2649cd268c
Switch to version 1.2.2
2016-01-12 20:57:47 +01:00
46b446f0c8
Add capacity to filter on merged sequences
2016-01-12 20:53:56 +01:00
6208cbee02
Fixes #20 and several other bugs related to that function
2016-01-08 11:40:39 +01:00
1d4c3f99b2
Patch a bug related to the -E et -M options
2015-10-27 20:16:07 +01:00
ba30e74dc9
Switch the version number to 1.2.1
2015-10-27 18:59:51 +01:00
0e8b97ca40
Modify the action of the -M option to fit the documentation
2015-10-27 18:58:32 +01:00
a95ae5126b
Change the ecotag doc according to the new -M option
2015-10-27 18:56:49 +01:00
0e2f859839
Patch bug in the -E option of ecotag and add the -M option to limit the
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action of the -E option
2015-10-27 18:48:03 +01:00
23717f5833
Add a first version of the obisubset tool and tag the version 1.2.0
2015-10-20 22:02:02 +02:00
fdeaf5956c
Change the way ecoPCRDB are written by obitools. If the obitools is
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called with several sequence files as input when the ecoPCRDB is
requested as output format, the sequences are splitted in several sdx
files
2015-10-02 16:36:25 +02:00
343d9ec6df
Switch to version 1.1.22
2015-08-03 23:16:37 +02:00
7a993ec841
Patch a wrong import in the file
2015-08-03 23:14:13 +02:00
6170fac081
fixed a problem with the progress bar in obiselect when there is more
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than one category
2015-07-20 15:24:30 +02:00
764ee27c0d
Switch to the version 1.1.21
2015-07-13 15:31:20 +02:00
18d87aa1b1
Add a small work around patch for the --skip and --only options in
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illuminapairedend
2015-07-11 23:38:47 +02:00
1c91c27ee3
Tag the version 1.1.20
2015-07-03 14:57:24 +02:00
22d343b46a
Patch two small print bug in the new ecotag
2015-07-03 14:55:44 +02:00
2af94b9da7
Add docuentation for the new options and an option to manage the ecotag
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cache size
2015-07-03 10:39:59 +02:00
aa064dda57
Add two general options for limiting the analysis of a file to only a
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sub-part of the data:
- --skip <N>
- --only <N>
They respectively allow to first skip the N first sequences, and to
analysize only the <N> next sequences.
2015-07-03 09:10:49 +02:00
f38ccae698
Add a --minimum-circle option to ecotag and a cache on the self
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alignment scores of 1000000 of pairwise scores
2015-07-02 16:14:22 +02:00
b99881817a
Closes #9 : adds a parser in obiaddtaxids for the UNITE 'general FASTA
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release' format
2015-06-12 15:08:58 +02:00
df093b3fa9
updated the UNITE parser of obiaddtaxids
2015-06-11 17:47:00 +02:00
9ba67985e9
Switch to the 1.1.18 version
2015-06-02 16:01:16 +02:00
f74aeff002
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2015-06-02 15:59:57 +02:00
b9fa718a2c
tag the 1.1.17 version
2015-06-02 15:53:41 +02:00
51a7ecde21
Patch the installer
2015-06-02 15:52:18 +02:00
6bf6cc6612
fixing a documentation problem (issue #3 )
2015-06-01 14:11:11 +02:00
191af9669a
modified the obisilva script to deal with version names containing dots,
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e.g. "119.1"
2015-06-01 14:07:19 +02:00
429fbbb61b
switching branch OBITools-1.01 to master
2015-06-01 10:41:26 +02:00
18c3a7dc08
Fixes #3
2015-05-22 18:00:13 +02:00
83b60ab7b0
Switch to version 1.1.16
2015-04-28 13:54:32 +00:00
8f61723141
Patch a bug in the getTaxid function
2015-04-28 13:52:19 +00:00
21ac43ca12
2015-04-16 13:59:12 +00:00
