8c995a47a0
add flex
2025-06-22 15:53:18 +02:00
02232d6453
Actualiser Dockerfile
2025-06-16 06:16:12 +00:00
9a9a968116
Actualiser Dockerfile
2025-06-14 05:14:06 +00:00
feca46cbfd
Actualiser Dockerfile
2025-06-14 05:12:06 +00:00
5ea47205c5
Actualiser Dockerfile
2025-06-14 05:11:12 +00:00
bca9928ade
Actualiser Dockerfile
2025-06-14 05:10:22 +00:00
8cafb794b0
Actualiser Dockerfile
2025-06-14 04:50:38 +00:00
cb13a8d228
Actualiser Dockerfile
2025-06-14 04:27:54 +00:00
83beecb6ec
Actualiser Dockerfile
2025-06-13 21:41:15 +00:00
73030ff54f
Actualiser Dockerfile
2025-06-13 18:08:19 +00:00
51ff099cca
Actualiser Dockerfile
2025-06-13 14:13:43 +00:00
171920398c
Update pour la dockerization
2025-06-12 17:29:50 +02:00
edb0106cc0
obiaddtaxids: UNITE databases not restrained to Fungi anymore, and
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better check of format
2020-04-05 17:14:04 +02:00
c198e7d8bf
Patch obitools for not importing too recent packages
2019-04-01 14:32:05 +02:00
a2db4ce5ae
ignore the new virtualenv for version 1.12.13
2019-04-01 14:12:10 +02:00
0e5ae4dd68
Switch to version 1.12.13
2019-04-01 14:06:07 +02:00
0d4bb5bbd6
cleaning 2
2019-04-01 14:04:17 +02:00
ee53992acc
Merge branch 'master' of git.metabarcoding.org:obitools/obitools
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# Conflicts:
# requirements.txt
2019-04-01 14:00:17 +02:00
45736d1771
Version switch
2019-04-01 13:59:09 +02:00
de2673174f
cleaning 1
2019-04-01 13:58:16 +02:00
1c318bd34d
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2019-03-26 11:36:54 +01:00
e99684a47d
Fixed --skip-on-error option for embl and genbank files (did not work
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because python generators can never resume after raising any exception)
2019-03-26 11:36:11 +01:00
f8dcd2f401
Fixed requirements.txt triggering errors with the 2 conditions for
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ipython
2019-03-15 16:34:23 +01:00
a43601cffd
obitaxonomy: fixed a bug when trying to add a new species by name
2018-11-01 18:07:56 +01:00
71cc64977b
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2018-09-19 15:52:38 +02:00
0cd2814fa7
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2018-09-19 15:39:47 +02:00
97268211ff
Sphinx: replaced the deprecated 'sphinx.ext.pngmath' extension with
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'sphinx.ext.imgmath' (would stop OBITools installation)
2018-09-19 15:36:51 +02:00
9962c452d8
Switch to version 1.2.11
2017-04-30 19:13:43 +02:00
abf8fde9f5
Switch to version 1.2.11
2017-04-30 18:57:28 +02:00
1311cf3c63
Limit Ipython version to stay compatible with python 2.7
2017-04-27 13:49:14 +02:00
59e2665de9
close #32
2017-04-20 18:46:03 +02:00
05cc5b06c7
Switch to version 1.2.10
2017-02-01 12:01:24 +01:00
54c68bab99
Fixed a bug when parsing embl files: accession ids end with ';' in recent embl formats. The ';' was kept by the old embl parser, resulting in many possible bugs.
2017-01-23 16:56:38 +01:00
5dc1f4d325
Switch to version 1.2.9 and ask for Cython >= 2.4.0
2016-08-03 09:21:05 +02:00
8bede453ae
Patch a memory bug in the progress bar printing leading to a bus error
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with some C compiler and the new version of Cython (0.2.4)
2016-08-03 09:07:49 +02:00
8cbac7a75e
Remove an extra log added for debuging at the beginning of the output
2016-08-03 07:59:58 +02:00
1b31d9091a
swithc to version 1.2.8
2016-07-28 08:06:34 +02:00
eaf50be2ca
Switch to cython 0.24
2016-07-28 08:05:14 +02:00
b24f993780
Remove some false error warning
2016-07-28 08:03:23 +02:00
e0bf25d72c
replace _BYTES call by the new .data.as_uchars to reflect the new API
2016-07-28 07:54:59 +02:00
a4a854a2a8
Merge branch 'master' of git.metabarcoding.org:obitools/obitools
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Conflicts:
src/obitools/align/_lcs.ext.4.c
the symbolic link is correctly restored
2016-07-06 15:23:47 +02:00
a186bf439c
Small changes on distutils.ext
2016-07-06 15:17:15 +02:00
a6daa709e9
Merge branch 'windows_version' into 'master'
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Windows version
This branch allows for compiling OBITools on windows in the cygwin environment.
It asks for installing the following cygwin packages :
- binutils
- gcc-core
- python 2.7
See merge request !1
2016-07-06 15:02:35 +02:00
22f98eaa4b
switch to the new version 1.2.7
2016-07-06 14:50:56 +02:00
38504ab03a
Final switch to the new cython interface on array.array
2016-07-06 14:46:31 +02:00
1b8a867fbf
switch to the new cython interface to array.array
2016-07-06 14:29:43 +02:00
9a9bd6c60f
switch to the new cython interface to array.array
2016-07-06 14:23:58 +02:00
6002fbaa98
Remove the reference to arrayarray.h
2016-07-06 14:12:56 +02:00
e869e16d9f
Adaptation for running with cygwin on windows platform
2016-07-06 11:55:32 +02:00
3a5ad68013
A very small fastq test file
2016-07-06 11:52:55 +02:00
