1264 Commits

Author SHA1 Message Date
608db8b1c0 [MOD] removed a print 2013-11-15 21:53:40 +00:00
47e6b4108c New version of obiclean with clustering options 2013-11-14 15:03:11 +00:00
5917031d61 [MOD] now handle dictionaries, in such case, sequences can then be found in several files named after the keys of the dictionary 2013-11-05 14:14:24 +00:00
411c5134ae Path 2 error in the option helps 2013-10-29 14:02:24 +00:00
22217920a5 fixed obiaddtaxids bug 2013-10-24 14:32:27 +00:00
621b499cb8 fixed obitaxonomy bug 2013-10-24 13:32:44 +00:00
2e18284dc0 fixed obitaxonomy bug 2013-10-24 13:29:20 +00:00
fc5d914093 obiaddtaxids now handle homonymes 2013-10-24 12:55:46 +00:00
7a7ee58a51 taxonomy databases now handle homonymes 2013-10-24 12:15:00 +00:00
82d92f8497 commented )D option in obitaxonomy because it doesn't work 2013-10-18 12:03:49 +00:00
47920a4687 obitaxonomy now checks if taxon already exists under the specific ancestor + changed -A option: if genus already existing it MUST be under restricting ancestor + fixed minor bug 2013-10-16 13:53:16 +00:00
12c080d7f4 rename --rank option to --seq-rank option 2013-09-19 01:58:11 +00:00
7b3886974d better handling of options in obiaddtaxids 2013-09-10 09:57:34 +00:00
0686029075 -w option in obitaxonomy 2013-09-04 12:07:16 +00:00
ca36a4fbfe fixed bug 2013-09-04 10:28:56 +00:00
cbf007b5a9 -w option in obitaxonomy 2013-09-04 10:27:02 +00:00
7e8835295a figuring out a bug 2013-09-04 10:11:10 +00:00
e3aaa53be1 removed a print 2013-09-04 10:00:20 +00:00
fbdf0db3c5 changed the UNITE parser in obiaddtaxids to remove empty fields ('-') 2013-09-04 09:46:26 +00:00
3b10f97587 [MOD] updated doc 2013-08-01 15:11:38 +00:00
ff287fc31d Patch variance estimator for returning 0 for singleton 2013-06-22 08:31:52 +00:00
3cea0f40fe patch a bug in obisample on the sampling with replacement method 2013-06-18 08:42:48 +00:00
4f5f4db49a add doc to the manifest 2013-05-20 10:13:30 +00:00
7bf04063f8 add doc to the manifest 2013-05-20 10:12:31 +00:00
fca5fcdb3e Preparing the 1.0.beta distribution 2013-05-17 04:56:37 +00:00
ad4c840826 2013-05-17 04:47:17 +00:00
1df533da2c patch a bug on ecotag output 2013-05-15 10:00:30 +00:00
0c68b00a39 [MOD] dirty patch for metabarcoding spring school 2013-05-14 11:10:45 +00:00
6b4b3e394e various small bugs 2013-05-12 15:06:37 +00:00
f87e920831 [MOD] keep taxid in every case + some doc 2013-05-12 13:50:12 +00:00
1c2c67be8b more or less finished obiconvert and its doc 2013-05-11 14:18:36 +00:00
55aff8c79f force doc rebuild 2013-05-10 13:36:35 +00:00
ad388a893a preliminary doc on obiconvert waiting celine version 2013-05-10 12:38:00 +00:00
eff2b57f64 2013-05-10 10:15:34 +00:00
1d6b07f9b8 2013-05-10 10:04:26 +00:00
a9f22fd6f5 2013-05-10 09:31:36 +00:00
d86fc78469 2013-05-09 14:36:50 +00:00
1ba77b5bb6 2013-05-09 14:36:24 +00:00
5a9a4ef703 patch ngsfilter doc identation 2013-05-09 14:05:46 +00:00
cfd1bf093f Add obiselect and obijoinpairedend documentation 2013-05-09 14:02:49 +00:00
2bfa8f75d5 Add obiselect and obijoinpairedend documentation 2013-05-09 14:01:55 +00:00
51a4be62fe 2013-05-08 16:06:45 +00:00
64ca346812 2013-05-08 16:06:08 +00:00
a042451992 [MOD] documentation for ecotaxstat 2013-05-01 17:11:24 +00:00
d6e8054499 [MOD] documentation for obidistribute 2013-05-01 17:07:39 +00:00
ec645302eb [MOD] documentation for ngsfilter 2013-05-01 17:04:43 +00:00
f5bc8935ee 2013-04-25 12:23:12 +00:00
29283c2f05 2013-04-25 12:22:55 +00:00
60eb80afd9 2013-04-25 12:22:30 +00:00
e1e9ebee8c Change doc of ecoPrimers 2013-04-19 20:00:31 +00:00