a95ae5126b
Change the ecotag doc according to the new -M option
2015-10-27 18:56:49 +01:00
0e2f859839
Patch bug in the -E option of ecotag and add the -M option to limit the
...
action of the -E option
2015-10-27 18:48:03 +01:00
23717f5833
Add a first version of the obisubset tool and tag the version 1.2.0
2015-10-20 22:02:02 +02:00
fdeaf5956c
Change the way ecoPCRDB are written by obitools. If the obitools is
...
called with several sequence files as input when the ecoPCRDB is
requested as output format, the sequences are splitted in several sdx
files
2015-10-02 16:36:25 +02:00
343d9ec6df
Switch to version 1.1.22
2015-08-03 23:16:37 +02:00
7a993ec841
Patch a wrong import in the file
2015-08-03 23:14:13 +02:00
6170fac081
fixed a problem with the progress bar in obiselect when there is more
...
than one category
2015-07-20 15:24:30 +02:00
764ee27c0d
Switch to the version 1.1.21
2015-07-13 15:31:20 +02:00
18d87aa1b1
Add a small work around patch for the --skip and --only options in
...
illuminapairedend
2015-07-11 23:38:47 +02:00
1c91c27ee3
Tag the version 1.1.20
2015-07-03 14:57:24 +02:00
22d343b46a
Patch two small print bug in the new ecotag
2015-07-03 14:55:44 +02:00
2af94b9da7
Add docuentation for the new options and an option to manage the ecotag
...
cache size
2015-07-03 10:39:59 +02:00
aa064dda57
Add two general options for limiting the analysis of a file to only a
...
sub-part of the data:
- --skip <N>
- --only <N>
They respectively allow to first skip the N first sequences, and to
analysize only the <N> next sequences.
2015-07-03 09:10:49 +02:00
f38ccae698
Add a --minimum-circle option to ecotag and a cache on the self
...
alignment scores of 1000000 of pairwise scores
2015-07-02 16:14:22 +02:00
b99881817a
Closes #9 : adds a parser in obiaddtaxids for the UNITE 'general FASTA
...
release' format
2015-06-12 15:08:58 +02:00
df093b3fa9
updated the UNITE parser of obiaddtaxids
2015-06-11 17:47:00 +02:00
9ba67985e9
Switch to the 1.1.18 version
2015-06-02 16:01:16 +02:00
f74aeff002
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2015-06-02 15:59:57 +02:00
b9fa718a2c
tag the 1.1.17 version
2015-06-02 15:53:41 +02:00
51a7ecde21
Patch the installer
2015-06-02 15:52:18 +02:00
6bf6cc6612
fixing a documentation problem (issue #3 )
2015-06-01 14:11:11 +02:00
191af9669a
modified the obisilva script to deal with version names containing dots,
...
e.g. "119.1"
2015-06-01 14:07:19 +02:00
429fbbb61b
switching branch OBITools-1.01 to master
2015-06-01 10:41:26 +02:00
18c3a7dc08
Fixes #3
2015-05-22 18:00:13 +02:00
83b60ab7b0
Switch to version 1.1.16
2015-04-28 13:54:32 +00:00
8f61723141
Patch a bug in the getTaxid function
2015-04-28 13:52:19 +00:00
21ac43ca12
2015-04-16 13:59:12 +00:00
6be099b885
2015-04-16 13:06:56 +00:00
37d24febd2
2015-04-16 13:05:21 +00:00
ee1063ed28
2015-04-16 12:42:46 +00:00
6bd5407a13
2015-04-16 12:42:11 +00:00
dd5fbb0246
2015-04-16 12:41:43 +00:00
3a82469281
Use setuptools instead of distutils as much as possible
2015-04-16 09:32:07 +00:00
edfa796c83
Resolve dependency with cython by making a temporary install if needed
2015-04-16 08:52:30 +00:00
704dbd50c8
Switch to version 1.1.6
2015-04-15 16:10:57 +00:00
bd32b9f4e6
Switch to version 1.1.6
2015-04-15 16:10:18 +00:00
4547dd490b
Add a local copy of setuptools
2015-04-15 16:09:25 +00:00
48dc9497d4
Try to solve dependencies with sphinx at the first install
2015-04-15 16:08:36 +00:00
2614654b41
Change the install documentation
2015-03-21 19:28:45 +00:00
6bfec50f25
Debug the reading of gziped files, change the doc of obipr2 and obisilva
2015-03-21 17:58:45 +00:00
28dad843f1
2015-03-14 15:55:19 +00:00
230be1c08b
Add dependency to ipython
2015-03-10 15:36:17 +00:00
1ca1fa0b03
Switch to the version 1.1.2
...
Add the exports of the doc in html epub and man pages
Modify the obitool script to setup the path to export/bin
2015-03-10 15:11:40 +00:00
9fa9d23c15
Switch to the version 1.1.2
...
Add the exports of the doc in html epub and man pages
Modify the obitool script to setup the path to export/bin
2015-03-10 15:10:53 +00:00
bb4170dfdd
in obitaxonomy, fixed a typo, and a problem when adding taxa from a file with an associated path
2015-03-06 16:20:01 +00:00
9893dba6f6
2015-03-05 18:40:29 +00:00
173dde2857
New realease of obitools including a first version of obipr2 and obisilva
2015-03-05 17:04:05 +00:00
49e3eb3c77
Switch to the version 1.1 of obitools
2015-03-02 13:41:31 +00:00
f40c2f5245
in obitaxonomy, fixed a problem when adding taxa from file with an associated path
2015-02-23 14:02:31 +00:00
c0eb996dd3
Create a new major version
2015-02-20 19:31:31 +00:00
