38 lines
831 B
C
38 lines
831 B
C
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/****************************************************************************
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* Sequence alignment functions header file *
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****************************************************************************/
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/**
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* @file obi_align.h
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* @author Celine Mercier
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* @date May 11th 2016
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* @brief Header file for the functions handling the alignment of DNA sequences.
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*/
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#ifndef OBI_ALIGN_H_
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#define OBI_ALIGN_H_
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#include <stdlib.h>
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#include <stdio.h>
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#include <stdbool.h>
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#include "obidms.h"
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#include "obidmscolumn.h"
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#include "obitypes.h"
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/**
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* @brief
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*
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* TODO
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*
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*/
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int obi_align_one_column(Obiview_p seq_view, OBIDMS_column_p seq_column, Obiview_p score_view, OBIDMS_column_p score_column, double threshold, bool normalize, int reference, bool similarity_mode);
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#endif /* OBI_ALIGN_H_ */
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