61 lines
1.5 KiB
CMake
61 lines
1.5 KiB
CMake
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cmake_minimum_required(VERSION 3.12)
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set(CMAKE_POSITION_INDEPENDENT_CODE ON)
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project (cobitools3)
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set(CMAKE_BUILD_TYPE Release)
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SET(CMAKE_C_COMPILER gcc)
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include_directories(${CMAKE_CURRENT_SOURCE_DIR})
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file(GLOB_RECURSE CSRC "*.c")
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add_library(cobitools3 SHARED obierrno.c
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obidms_taxonomy.c
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obiblob_indexer.c
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obi_lcs.c
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obidmscolumn_str.c
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bloom.c
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build_reference_db.c
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obidmscolumn_array.c
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obidmscolumn_idx.c
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obidmscolumn_bool.c
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libjson/json_utils.c
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libjson/cJSON.c
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obidmscolumn_blob.c
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dna_seq_indexer.c
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obi_ecotag.c
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encode.c
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obiavl.c
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sse_banded_LCS_alignment.c
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kmer_similarity.c
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obidmscolumn_qual.c
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obi_clean.c
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utils.c
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uint8_indexer.c
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murmurhash2.c
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obidmscolumn_char.c
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obiview.c
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obidmscolumn_int.c
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linked_list.c
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obiblob.c
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hashtable.c
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obidmscolumn.c
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char_str_indexer.c
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obidmscolumn_float.c
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upperband.c
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crc64.c
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obidmscolumn_seq.c
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obilittlebigman.c
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obidmscolumndir.c
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obidms.c
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obi_ecopcr.c
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libecoPCR/libthermo/nnparams.c
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libecoPCR/ecoapat.c
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libecoPCR/libapat/libstki.c
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libecoPCR/libapat/apat_search.c
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libecoPCR/libapat/apat_parse.c
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libecoPCR/ecodna.c
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libecoPCR/ecoMalloc.c
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libecoPCR/ecoError.c
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obitypes.c
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array_indexer.c)
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