2015-06-23 18:35:34 +02:00
|
|
|
/****************************************************************************
|
2015-06-26 17:53:03 +02:00
|
|
|
* OBIDMS column directories functions *
|
2015-06-23 18:35:34 +02:00
|
|
|
****************************************************************************/
|
|
|
|
|
|
|
|
/**
|
2015-06-26 17:53:03 +02:00
|
|
|
* @file obidmscolumndir.c
|
2015-06-23 18:35:34 +02:00
|
|
|
* @author Celine Mercier
|
|
|
|
* @date 18 June 2015
|
2015-06-26 17:53:03 +02:00
|
|
|
* @brief Functions for OBIDMS column directories.
|
2015-06-23 18:35:34 +02:00
|
|
|
*/
|
|
|
|
|
|
|
|
|
|
|
|
#include <stdlib.h>
|
|
|
|
#include <stdio.h>
|
|
|
|
#include <sys/types.h>
|
|
|
|
#include <dirent.h>
|
|
|
|
#include <fcntl.h>
|
|
|
|
#include <unistd.h>
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
#include "obidmscolumndir.h"
|
2015-06-23 18:35:34 +02:00
|
|
|
#include "obidms.h"
|
|
|
|
#include "private_at_functions.h"
|
|
|
|
#include "obierrno.h"
|
|
|
|
|
|
|
|
|
|
|
|
/**************************************************************************
|
|
|
|
*
|
|
|
|
* D E C L A R A T I O N O F T H E P R I V A T E F U N C T I O N S
|
|
|
|
*
|
|
|
|
**************************************************************************/
|
|
|
|
|
|
|
|
|
|
|
|
/**
|
2015-06-26 17:53:03 +02:00
|
|
|
* Internal function building the column directory name from an OBIDMS column name.
|
2015-06-23 18:35:34 +02:00
|
|
|
*
|
2015-06-26 17:53:03 +02:00
|
|
|
* The function builds the directory name corresponding to an OBIDMS column directory.
|
2015-06-23 18:35:34 +02:00
|
|
|
* It checks also that the name is not too long.
|
|
|
|
*
|
|
|
|
* @warning The returned pointer has to be freed by the caller.
|
|
|
|
*
|
|
|
|
* @param column_name the name of the OBIDMS column
|
|
|
|
*
|
|
|
|
* @return a pointer to the OBIDMS column directory name
|
|
|
|
* @retvalue <column_directory_name> if everything is ok
|
|
|
|
* @retvalue NULL if an error occurs
|
|
|
|
*
|
|
|
|
* ###Error values
|
|
|
|
* - OBIDMS_MEMORY_ERROR : something wrong occurred during memory allocation.
|
|
|
|
* - OBIDMS_LONG_NAME_ERROR : the database name exceeds the limit.
|
|
|
|
*
|
|
|
|
* @since June 2015
|
|
|
|
* @author Celine Mercier (celine.mercier@metabarcoding.org)
|
|
|
|
*/
|
|
|
|
static char* build_column_directory_name(const char* column_name);
|
|
|
|
|
|
|
|
|
|
|
|
/************************************************************************
|
|
|
|
*
|
|
|
|
* D E F I N I T I O N O F T H E P R I V A T E F U N C T I O N S
|
|
|
|
*
|
|
|
|
************************************************************************/
|
|
|
|
|
|
|
|
static char* build_column_directory_name(const char* column_name)
|
|
|
|
{
|
|
|
|
char* column_directory_name;
|
|
|
|
|
|
|
|
// Build the database directory name
|
|
|
|
if (asprintf(&column_directory_name, "%s.obicol", column_name) < 0)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBICOLDIR_MEMORY_ERROR);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Test if the database name is not too long
|
|
|
|
if (strlen(column_directory_name) >= OBIDMS_COLUMN_DIR_MAX_NAME)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBICOLDIR_LONG_NAME_ERROR);
|
|
|
|
free(column_directory_name);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
return column_directory_name;
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
/**********************************************************************
|
|
|
|
*
|
|
|
|
* D E F I N I T I O N O F T H E P U B L I C F U N C T I O N S
|
|
|
|
*
|
|
|
|
**********************************************************************/
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
int obi_column_directory_exists(OBIDMS_p dms, const char* column_name)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
|
|
|
struct stat buffer;
|
|
|
|
char* column_directory_name;
|
|
|
|
char* full_path;
|
|
|
|
int check_dir;
|
|
|
|
int dms_file_descriptor;
|
|
|
|
|
|
|
|
// Build and check the directory name
|
|
|
|
column_directory_name = build_column_directory_name(column_name);
|
|
|
|
if (column_directory_name == NULL)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBICOLDIR_UNKNOWN_ERROR);
|
|
|
|
return -1;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Get the file descriptor for the dms
|
|
|
|
dms_file_descriptor = dirfd(dms->directory);
|
|
|
|
if (dms_file_descriptor < 0)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBIDMS_UNKNOWN_ERROR);
|
|
|
|
free(column_directory_name);
|
|
|
|
return -1;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Get the full path for the column directory
|
|
|
|
full_path = get_full_path(dms_file_descriptor, column_directory_name);
|
|
|
|
if (full_path == NULL)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBICOLDIR_UNKNOWN_ERROR);
|
|
|
|
free(column_directory_name);
|
|
|
|
return -1;
|
|
|
|
}
|
|
|
|
|
|
|
|
check_dir = stat(full_path, &buffer);
|
|
|
|
|
|
|
|
free(column_directory_name);
|
|
|
|
free(full_path);
|
|
|
|
|
|
|
|
if(check_dir == 0)
|
|
|
|
return 1;
|
|
|
|
else
|
|
|
|
return 0;
|
|
|
|
}
|
|
|
|
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
OBIDMS_column_directory_p obi_create_column_directory(OBIDMS_p dms, const char* column_name)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
|
|
|
char* column_directory_name;
|
|
|
|
int dms_file_descriptor;
|
|
|
|
|
|
|
|
// Build and check the directory name
|
|
|
|
column_directory_name = build_column_directory_name(column_name);
|
|
|
|
if (column_directory_name == NULL)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBICOLDIR_UNKNOWN_ERROR);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Get the file descriptor for the dms
|
|
|
|
dms_file_descriptor = dirfd(dms->directory);
|
|
|
|
if (dms_file_descriptor < 0)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBIDMS_UNKNOWN_ERROR);
|
|
|
|
free(column_directory_name);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Try to create the directory
|
|
|
|
if (private_mkdirat(dms_file_descriptor, column_directory_name, 0x777) < 0)
|
|
|
|
{
|
|
|
|
if (errno == EEXIST)
|
|
|
|
obi_set_errno(OBICOLDIR_EXIST_ERROR);
|
|
|
|
else
|
|
|
|
obi_set_errno(OBICOLDIR_UNKNOWN_ERROR);
|
|
|
|
free(column_directory_name);
|
|
|
|
close(dms_file_descriptor);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
free(column_directory_name);
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
return obi_open_column_directory(dms, column_name);
|
2015-06-23 18:35:34 +02:00
|
|
|
}
|
|
|
|
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
OBIDMS_column_directory_p obi_open_column_directory(OBIDMS_p dms, const char* column_name)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
2015-06-26 17:53:03 +02:00
|
|
|
OBIDMS_column_directory_p column_directory;
|
2015-06-23 18:35:34 +02:00
|
|
|
char* column_directory_name;
|
|
|
|
DIR* directory;
|
|
|
|
int dms_file_descriptor;
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
column_directory = NULL;
|
2015-06-23 18:35:34 +02:00
|
|
|
|
|
|
|
// Build and check the directory name
|
|
|
|
column_directory_name = build_column_directory_name(column_name);
|
|
|
|
if (column_directory_name == NULL)
|
|
|
|
return NULL;
|
|
|
|
|
|
|
|
// Get the file descriptor for the dms
|
|
|
|
dms_file_descriptor = dirfd(dms->directory);
|
|
|
|
if (dms_file_descriptor < 0)
|
|
|
|
{
|
|
|
|
obi_set_errno(OBIDMS_UNKNOWN_ERROR);
|
|
|
|
free(column_directory_name);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Try to open the column directory
|
|
|
|
directory = private_opendirat(dms_file_descriptor, column_directory_name);
|
|
|
|
if (directory == NULL) {
|
|
|
|
switch (errno)
|
|
|
|
{
|
|
|
|
case ENOENT:
|
|
|
|
obi_set_errno(OBICOLDIR_NOT_EXIST_ERROR);
|
|
|
|
break;
|
|
|
|
|
|
|
|
case EACCES:
|
|
|
|
obi_set_errno(OBICOLDIR_ACCESS_ERROR);
|
|
|
|
break;
|
|
|
|
|
|
|
|
case ENOMEM:
|
|
|
|
obi_set_errno(OBICOLDIR_MEMORY_ERROR);
|
|
|
|
break;
|
|
|
|
|
|
|
|
default:
|
|
|
|
obi_set_errno(OBICOLDIR_UNKNOWN_ERROR);
|
|
|
|
}
|
|
|
|
free(column_directory_name);
|
|
|
|
close(dms_file_descriptor);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Allocate the column dir structure
|
2015-06-26 17:53:03 +02:00
|
|
|
column_directory = (OBIDMS_column_directory_p) malloc(sizeof(OBIDMS_column_directory_t));
|
|
|
|
if (column_directory == NULL)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
|
|
|
obi_set_errno(OBICOLDIR_MEMORY_ERROR);
|
|
|
|
free(column_directory_name);
|
|
|
|
close(dms_file_descriptor);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
// Initialize the data structure
|
2015-06-26 17:53:03 +02:00
|
|
|
strcpy(column_directory->directory_name, column_directory_name);
|
|
|
|
strcpy(column_directory->column_name, column_name);
|
|
|
|
column_directory->directory = directory;
|
2015-06-23 18:35:34 +02:00
|
|
|
|
|
|
|
free(column_directory_name);
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
return column_directory;
|
2015-06-23 18:35:34 +02:00
|
|
|
}
|
|
|
|
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
OBIDMS_column_directory_p obi_column_directory(OBIDMS_p dms, const char* column_name)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
|
|
|
int exists;
|
2015-06-26 17:53:03 +02:00
|
|
|
exists = obi_column_directory_exists(dms, column_name);
|
2015-06-23 18:35:34 +02:00
|
|
|
|
|
|
|
switch (exists)
|
|
|
|
{
|
|
|
|
case 0:
|
2015-06-26 17:53:03 +02:00
|
|
|
return obi_create_column_directory(dms, column_name);
|
2015-06-23 18:35:34 +02:00
|
|
|
case 1:
|
2015-06-26 17:53:03 +02:00
|
|
|
return obi_open_column_directory(dms, column_name);
|
2015-06-23 18:35:34 +02:00
|
|
|
};
|
|
|
|
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
|
|
|
|
|
2015-06-26 17:53:03 +02:00
|
|
|
int obi_close_column_directory(OBIDMS_column_directory_p column_directory)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
2015-06-26 17:53:03 +02:00
|
|
|
if (column_directory != NULL)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
|
|
|
// Close the column directory
|
2015-06-26 17:53:03 +02:00
|
|
|
if (closedir(column_directory->directory) < 0)
|
2015-06-23 18:35:34 +02:00
|
|
|
{
|
|
|
|
obi_set_errno(OBICOLDIR_MEMORY_ERROR);
|
2015-06-26 17:53:03 +02:00
|
|
|
free(column_directory);
|
2015-06-23 18:35:34 +02:00
|
|
|
return -1;
|
|
|
|
}
|
2015-06-26 17:53:03 +02:00
|
|
|
free(column_directory);
|
2015-06-23 18:35:34 +02:00
|
|
|
}
|
|
|
|
|
|
|
|
return 0;
|
|
|
|
}
|
|
|
|
|