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Cython API: view_NUC_SEQS changes to go with previous commits

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This commit is contained in:
Celine Mercier
2017-07-27 19:39:26 +02:00
parent 9701b1230c
commit 0655063bb0
1 changed files with 5 additions and 7 deletions
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12
python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx
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@ -51,7 +51,7 @@ cdef class View_NUC_SEQS(View):
message = "Error : Cannot create view %s" % bytes2str(view_name_b)
raise RuntimeError(message)
view = OBIWrapper.new(View_NUC_SEQS, pointer)
view = OBIWrapper.new_wrapper(View_NUC_SEQS, pointer)
view._dms = dms
dms.register(view)
@ -65,13 +65,11 @@ cdef class View_NUC_SEQS(View):
else : # TODO assume str or bytes for optimization?
return self.get_column(item) # TODO hyper lent dans la pratique
def __setitem__(self, index_t line_idx, Nuc_Seq sequence_obj) :
for key in sequence_obj :
self[line_idx][key] = sequence_obj[key]
# TODO make properties for id, seq, def columns etc
# TODO? test if efficiency gain
# def __setitem__(self, index_t line_idx, Nuc_Seq sequence_obj) :
# for key in sequence_obj :
# self[line_idx][key] = sequence_obj[key]
def register_class() :