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import: added import of UNITE fasta format

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This commit is contained in:
mercierc
2022-05-03 10:54:41 +12:00
parent f9b99a9397
commit 0a2b8adb50
3 changed files with 37 additions and 16 deletions
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6
python/obitools3/apps/optiongroups/__init__.py
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@ -57,6 +57,12 @@ def __addImportInputOption(optionManager):
const=b'rdp',
help="Input file is in RDP training set fasta format. If NCBI taxonomy provided with --taxonomy, taxid and scientific name will be added for each sequence.")
group.add_argument('--unite-input',
action="store_const", dest="obi:inputformat",
default=None,
const=b'unite',
help="Input file is in UNITE fasta format. If NCBI taxonomy provided with --taxonomy, taxid and scientific name will be added for each sequence.")
group.add_argument('--embl-input',
action="store_const", dest="obi:inputformat",
default=None,