Patch a bug about the reading of the last sequence

2016-05-21 10:28:03 +02:00
parent e681ca646d
commit 0b9a41d952
1 changed files with 9 additions and 3 deletions
--- a/python/obitools3/parsers/fasta.pyx
+++ b/python/obitools3/parsers/fasta.pyx
@ -28,9 +28,14 @@ def fastaIterator(lineiterator, int buffersize=100000000):
        ident,tags,definition = parseHeader(line)
        s = []
        line = next(i)
-        while line[0]!='>':
-            s.append(line[0:-1])
-            line = next(i)
+        
+        try:
+            while line[0]!='>':
+                s.append(line[0:-1])
+                line = next(i)
+        except StopIteration:
+            pass
+        
        sequence  = "".join(s)
        quality   = None

@ -44,3 +49,4 @@ def fastaIterator(lineiterator, int buffersize=100000000):
        
    
        
+