Options stuff... ;-)

2017-07-25 13:07:03 +02:00
parent 28259cd88b
commit 0f6ae7dfa6
3 changed files with 22 additions and 9 deletions
--- a/python/obi.py
+++ b/python/obi.py
@ -21,9 +21,15 @@ default_config = { 'software'       : "The OBITools",
                   'log'            : False,
                   'loglevel'       : 'INFO',
                   'progress'       : True,
+                   'inputURI'       : None,
                   'defaultdms'     : None,
                   'inputview'      : None,
-                   'outputview'     : None
+                   'outputview'     : None,
+                   'skip'           : 0,
+                   'only'           : None,
+                   'skiperror'      : True,
+                   'qualityformat'  : 'sanger',
+                   'moltype'        : 'nuc'
                  }

 root_config_name='obi'