obi ls: now done in C (preparing things for R packages to read DMS) and

switch to version 3.0.0b36
This commit is contained in:
Celine Mercier
2020-09-29 17:51:39 +02:00
parent b6648ae81e
commit 137c109f86
14 changed files with 460 additions and 59 deletions

View File

@ -17,6 +17,7 @@
#include <sys/mman.h>
#include <inttypes.h>
#include <math.h>
#include <time.h>
//#include <ctype.h>
#include "obiview.h"
@ -1185,6 +1186,7 @@ static int close_view(Obiview_p view)
obidebug(1, "\nError getting a column to close from the linked list of column pointers of a view");
return -1;
}
if (obi_close_column(column) < 0)
{
obidebug(1, "\nError closing a column while closing a view");
@ -2603,6 +2605,144 @@ int obi_view_create_column_alias(Obiview_p view, const char* current_name, const
}
char* obi_view_formatted_infos(Obiview_p view, bool detailed)
{
int i;
char* view_infos = NULL;
char* view_name = NULL;
time_t creation_date = NULL;
char* creation_date_str = NULL;
index_t line_count;
char line_count_str[256];
OBIDMS_column_p column;
char* column_alias = NULL;
char* column_infos = NULL;
char* comments = NULL;
// View name
view_name = (view->infos)->name;
view_infos = (char*) malloc((strlen("# View name:\n")+strlen(view_name)+1) * sizeof(char));
strcpy(view_infos, "# View name:\n");
strcat(view_infos, view_name);
// Date created
if (view->read_only) // Date not saved until view is finished writing
{
creation_date = (view->infos)->creation_date;
creation_date_str = ctime(&creation_date);
view_infos = realloc(view_infos, (strlen(view_infos)+strlen("\n# Date created:\n")+strlen(creation_date_str)+1) * sizeof(char));
strcat(view_infos, "\n# Date created:\n");
strcat(view_infos, creation_date_str);
}
// Line count
line_count = (view->infos)->line_count;
snprintf(line_count_str, sizeof line_count_str, "%zu", line_count);
view_infos = realloc(view_infos, (strlen(view_infos)+strlen("\n# Line count:\n")+strlen(line_count_str)+1) * sizeof(char));
strcat(view_infos, "# Line count:\n");
strcat(view_infos, line_count_str);
// Columns: go through each, print their alias then their infos
view_infos = realloc(view_infos, (strlen(view_infos)+strlen("\n# Columns:")+1) * sizeof(char));
strcat(view_infos, "\n# Columns:");
for (i=0; i<((view->infos)->column_count); i++)
{
column = *((OBIDMS_column_p*)ll_get(view->columns, i));
if (column == NULL)
{
obidebug(1, "\nError getting a column from the linked list of column pointers of a view to format view infos");
return NULL;
}
// Column alias
column_alias = (((view->infos)->column_references)[i]).alias;
view_infos = realloc(view_infos, (strlen(view_infos)+strlen("\n")+strlen(column_alias)+strlen(", ")+1) * sizeof(char));
strcat(view_infos, "\n");
strcat(view_infos, column_alias);
strcat(view_infos, ", ");
// Column infos
column_infos = obi_column_formatted_infos(column, detailed);
if (column_infos == NULL)
{
obidebug(1, "\nError getting column infos to format view infos");
return NULL;
}
view_infos = realloc(view_infos, (strlen(view_infos)+strlen(column_infos)+1) * sizeof(char));
strcat(view_infos, column_infos);
free(column_infos);
}
// Get commments if detailed informations required
if (detailed)
{
comments = (view->infos)->comments;
if (strlen(comments)>2) // Add all comments if not empty
{
view_infos = realloc(view_infos, (strlen(view_infos)+strlen("\n# Comments:\n")+strlen(comments)+1) * sizeof(char));
if (view_infos == NULL)
{
obi_set_errno(OBI_MALLOC_ERROR);
obidebug(1, "\nError allocating memory for formatted view infos");
return NULL;
}
strcat(view_infos, "\n# Comments:\n");
strcat(view_infos, comments);
}
}
view_infos = realloc(view_infos, (strlen(view_infos)+2) * sizeof(char));
strcat(view_infos, "\n");
return view_infos;
}
char* obi_view_formatted_infos_one_line(Obiview_p view)
{
int i;
char* view_infos = NULL;
char* view_name = NULL;
time_t creation_date = NULL;
char* creation_date_str = NULL;
index_t line_count;
char line_count_str[256];
// View name
view_name = (view->infos)->name;
view_infos = (char*) malloc((strlen(" # ")+strlen(view_name)+2) * sizeof(char));
strcpy(view_infos, " # ");
strcat(view_infos, view_name);
strcat(view_infos, ":");
// Date created
if (view->read_only) // Date not saved until view is finished writing
{
creation_date = (view->infos)->creation_date;
creation_date_str = ctime(&creation_date);
// Delete \n added by ctime
creation_date_str[strlen(creation_date_str)-1] = '\0';
view_infos = realloc(view_infos, (strlen(view_infos)+strlen(" Date created: ")+strlen(creation_date_str)+1) * sizeof(char));
strcat(view_infos, " Date created: ");
strcat(view_infos, creation_date_str);
}
// Line count
line_count = (view->infos)->line_count;
snprintf(line_count_str, sizeof line_count_str, "%zu", line_count);
view_infos = realloc(view_infos, (strlen(view_infos)+strlen(" ; Line count: ")+strlen(line_count_str)+1) * sizeof(char));
strcat(view_infos, " ; Line count: ");
strcat(view_infos, line_count_str);
view_infos = realloc(view_infos, (strlen(view_infos)+2) * sizeof(char));
strcat(view_infos, "\n");
return view_infos;
}
int obi_view_write_comments(Obiview_p view, const char* comments)
{
size_t new_size;