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Fixed a bug where some commands wouldn't work if the input DMS was not

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Celine Mercier
2019-07-25 11:59:19 +02:00
parent 9f38cd8cf6
commit 13952358b3
5 changed files with 6 additions and 6 deletions
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python/obitools3/commands/build_ref_db.pyx
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@ -81,7 +81,7 @@ def run(config):
input_view_name.append("taxonomy/"+config['obi']['taxoURI'].split("/")[-1])
comments = View.print_config(config, "build_ref_db", command_line, input_dms_name=input_dms_name, input_view_name=input_view_name)
if build_reference_db(tobytes(i_dms_name), tobytes(i_view_name), tobytes(taxonomy_name), tobytes(o_view_name), comments, config['build_ref_db']['threshold']) < 0:
if build_reference_db(i_dms.full_path, tobytes(i_view_name), tobytes(taxonomy_name), tobytes(o_view_name), comments, config['build_ref_db']['threshold']) < 0:
raise Exception("Error building a reference database")
# If the input and output DMS are not the same, export result view to output DMS