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Import taxo

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This commit is contained in:
Eric Coissac
2019-03-26 16:17:44 +01:00
parent 0b4ea49539
commit 14eca43eac
2 changed files with 13 additions and 5 deletions
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6
python/obitools3/dms/taxo/taxo.pxd
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@ -1,10 +1,10 @@
#cython: language_level=3 #cython: language_level=3
from ..capi.obitaxonomy cimport ecotx_t, OBIDMS_taxonomy_p from obitools3.dms.capi.obitaxonomy cimport ecotx_t, OBIDMS_taxonomy_p
from ..dms cimport DMS from obitools3.dms.dms cimport DMS
from ..object cimport OBIWrapper from obitools3.dms.object cimport OBIWrapper
cdef class Taxonomy(OBIWrapper) : cdef class Taxonomy(OBIWrapper) :

12
python/obitools3/dms/taxo/taxo.pyx
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@ -1,8 +1,14 @@
#cython: language_level=3 #cython: language_level=3
from obitools3.utils cimport str2bytes, bytes2str, tobytes, tostr from obitools3.utils cimport str2bytes, bytes2str, tobytes, tostr
from obitools3.dms.capi.obitaxonomy cimport ecotx_t, OBIDMS_taxonomy_p
from ..capi.obitaxonomy cimport obi_taxonomy_exists, \ from obitools3.dms.dms cimport DMS
from obitools3.dms.dms import DMS
from obitools3.dms.object cimport OBIWrapper
from obitools3.dms.capi.obitaxonomy cimport obi_taxonomy_exists, \
obi_read_taxonomy, \ obi_read_taxonomy, \
obi_read_taxdump, \ obi_read_taxdump, \
obi_write_taxonomy, \ obi_write_taxonomy, \
@ -15,7 +21,9 @@ from ..capi.obitaxonomy cimport obi_taxonomy_exists, \
obi_taxo_get_genus, \ obi_taxo_get_genus, \
obi_taxo_get_family, \ obi_taxo_get_family, \
ecotx_t ecotx_t
from obitools3.dms.capi.obidms cimport OBIDMS_p
from cpython.pycapsule cimport PyCapsule_New, PyCapsule_GetPointer from cpython.pycapsule cimport PyCapsule_New, PyCapsule_GetPointer
import tarfile import tarfile