Merge commit '3d842ff7'
This commit is contained in:
Celine Mercier
2
python/.gitignore
vendored
Normal file
2
python/.gitignore
vendored
Normal file
@ -0,0 +1,2 @@
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/.DS_Store
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/OBITools3.egg-info/
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@ -1,71 +0,0 @@
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#!/usr/local/bin/python3.4
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||||
'''
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||||
obi -- shortdesc
|
||||
|
||||
obi is a description
|
||||
|
||||
It defines classes_and_methods
|
||||
|
||||
@author: user_name
|
||||
|
||||
@copyright: 2014 organization_name. All rights reserved.
|
||||
|
||||
@license: license
|
||||
|
||||
@contact: user_email
|
||||
@deffield updated: Updated
|
||||
'''
|
||||
|
||||
|
||||
default_config = { 'software' : "The OBITools",
|
||||
'log' : False,
|
||||
'loglevel' : 'INFO',
|
||||
'progress' : True,
|
||||
'inputURI' : None,
|
||||
'outputURI' : None,
|
||||
'defaultdms' : None,
|
||||
'inputview' : None,
|
||||
'outputview' : None,
|
||||
'skip' : 0,
|
||||
'only' : None,
|
||||
'fileformat' : None,
|
||||
'skiperror' : True,
|
||||
'qualityformat' : b'sanger',
|
||||
'offset' : -1,
|
||||
'noquality' : False,
|
||||
'seqtype' : b'nuc',
|
||||
"header" : False,
|
||||
"sep" : None,
|
||||
"quote" : [b"'",b'"'],
|
||||
"dec" : b".",
|
||||
"nastring" : b"NA",
|
||||
"stripwhite" : True,
|
||||
"blanklineskip" : True,
|
||||
"commentchar" : b"#",
|
||||
"nocreatedms" : False
|
||||
}
|
||||
|
||||
root_config_name='obi'
|
||||
|
||||
from obitools3.apps.config import getConfiguration # @UnresolvedImport
|
||||
from obitools3.version import version
|
||||
|
||||
__all__ = []
|
||||
__version__ = version
|
||||
__date__ = '2014-09-28'
|
||||
__updated__ = '2014-09-28'
|
||||
|
||||
DEBUG = 1
|
||||
TESTRUN = 0
|
||||
PROFILE = 0
|
||||
|
||||
|
||||
if __name__ =="__main__":
|
||||
|
||||
config = getConfiguration(root_config_name,
|
||||
default_config)
|
||||
|
||||
config[root_config_name]['module'].run(config)
|
||||
|
||||
|
||||
|
||||
1
python/obitools3/.gitignore
vendored
Normal file
1
python/obitools3/.gitignore
vendored
Normal file
@ -0,0 +1 @@
|
||||
/.DS_Store
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
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||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
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|
||||
@ -1,110 +0,0 @@
|
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../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
1
python/obitools3/commands/.gitignore
vendored
Normal file
1
python/obitools3/commands/.gitignore
vendored
Normal file
@ -0,0 +1 @@
|
||||
/.DS_Store
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
@ -1,103 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
1
python/obitools3/dms/.gitignore
vendored
Normal file
1
python/obitools3/dms/.gitignore
vendored
Normal file
@ -0,0 +1 @@
|
||||
/.DS_Store
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../src/obi_lcs.h
|
||||
../../../../src/obi_lcs.c
|
||||
../../../../src/obierrno.h
|
||||
../../../../src/obierrno.c
|
||||
../../../../src/upperband.h
|
||||
../../../../src/upperband.c
|
||||
../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../src/obiblob.h
|
||||
../../../../src/obiblob.c
|
||||
../../../../src/utils.h
|
||||
../../../../src/utils.c
|
||||
../../../../src/obidms.h
|
||||
../../../../src/obidms.c
|
||||
../../../../src/libjson/json_utils.h
|
||||
../../../../src/libjson/json_utils.c
|
||||
../../../../src/libjson/cJSON.h
|
||||
../../../../src/libjson/cJSON.c
|
||||
../../../../src/obiavl.h
|
||||
../../../../src/obiavl.c
|
||||
../../../../src/bloom.h
|
||||
../../../../src/bloom.c
|
||||
../../../../src/crc64.h
|
||||
../../../../src/crc64.c
|
||||
../../../../src/murmurhash2.h
|
||||
../../../../src/murmurhash2.c
|
||||
../../../../src/obidmscolumn.h
|
||||
../../../../src/obidmscolumn.c
|
||||
../../../../src/obitypes.h
|
||||
../../../../src/obitypes.c
|
||||
../../../../src/obidmscolumndir.h
|
||||
../../../../src/obidmscolumndir.c
|
||||
../../../../src/obiblob_indexer.h
|
||||
../../../../src/obiblob_indexer.c
|
||||
../../../../src/obiview.h
|
||||
../../../../src/obiview.c
|
||||
../../../../src/hashtable.h
|
||||
../../../../src/hashtable.c
|
||||
../../../../src/linked_list.h
|
||||
../../../../src/linked_list.c
|
||||
../../../../src/obidmscolumn_array.h
|
||||
../../../../src/obidmscolumn_array.c
|
||||
../../../../src/obidmscolumn_blob.h
|
||||
../../../../src/obidmscolumn_blob.c
|
||||
../../../../src/obidmscolumn_idx.h
|
||||
../../../../src/obidmscolumn_idx.c
|
||||
../../../../src/obidmscolumn_bool.h
|
||||
../../../../src/obidmscolumn_bool.c
|
||||
../../../../src/obidmscolumn_char.h
|
||||
../../../../src/obidmscolumn_char.c
|
||||
../../../../src/obidmscolumn_float.h
|
||||
../../../../src/obidmscolumn_float.c
|
||||
../../../../src/obidmscolumn_int.h
|
||||
../../../../src/obidmscolumn_int.c
|
||||
../../../../src/obidmscolumn_qual.h
|
||||
../../../../src/obidmscolumn_qual.c
|
||||
../../../../src/obidmscolumn_seq.h
|
||||
../../../../src/obidmscolumn_seq.c
|
||||
../../../../src/obidmscolumn_str.h
|
||||
../../../../src/obidmscolumn_str.c
|
||||
../../../../src/array_indexer.h
|
||||
../../../../src/array_indexer.c
|
||||
../../../../src/char_str_indexer.h
|
||||
../../../../src/char_str_indexer.c
|
||||
../../../../src/dna_seq_indexer.h
|
||||
../../../../src/dna_seq_indexer.c
|
||||
../../../../src/encode.c
|
||||
../../../../src/encode.h
|
||||
../../../../src/uint8_indexer.c
|
||||
../../../../src/uint8_indexer.h
|
||||
../../../../src/build_reference_db.c
|
||||
../../../../src/build_reference_db.h
|
||||
../../../../src/kmer_similarity.c
|
||||
../../../../src/kmer_similarity.h
|
||||
../../../../src/obi_clean.c
|
||||
../../../../src/obi_clean.h
|
||||
../../../../src/obi_ecopcr.c
|
||||
../../../../src/obi_ecopcr.h
|
||||
../../../../src/obi_ecotag.c
|
||||
../../../../src/obi_ecotag.h
|
||||
../../../../src/obidms_taxonomy.c
|
||||
../../../../src/obidms_taxonomy.h
|
||||
../../../../src/obilittlebigman.c
|
||||
../../../../src/obilittlebigman.h
|
||||
../../../../src/_sse.h
|
||||
../../../../src/obidebug.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../src/libecoPCR/ecodna.c
|
||||
../../../../src/libecoPCR/ecoError.c
|
||||
../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../src/obi_lcs.h
|
||||
../../../../src/obi_lcs.c
|
||||
../../../../src/obierrno.h
|
||||
../../../../src/obierrno.c
|
||||
../../../../src/upperband.h
|
||||
../../../../src/upperband.c
|
||||
../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../src/obiblob.h
|
||||
../../../../src/obiblob.c
|
||||
../../../../src/utils.h
|
||||
../../../../src/utils.c
|
||||
../../../../src/obidms.h
|
||||
../../../../src/obidms.c
|
||||
../../../../src/libjson/json_utils.h
|
||||
../../../../src/libjson/json_utils.c
|
||||
../../../../src/libjson/cJSON.h
|
||||
../../../../src/libjson/cJSON.c
|
||||
../../../../src/obiavl.h
|
||||
../../../../src/obiavl.c
|
||||
../../../../src/bloom.h
|
||||
../../../../src/bloom.c
|
||||
../../../../src/crc64.h
|
||||
../../../../src/crc64.c
|
||||
../../../../src/murmurhash2.h
|
||||
../../../../src/murmurhash2.c
|
||||
../../../../src/obidmscolumn.h
|
||||
../../../../src/obidmscolumn.c
|
||||
../../../../src/obitypes.h
|
||||
../../../../src/obitypes.c
|
||||
../../../../src/obidmscolumndir.h
|
||||
../../../../src/obidmscolumndir.c
|
||||
../../../../src/obiblob_indexer.h
|
||||
../../../../src/obiblob_indexer.c
|
||||
../../../../src/obiview.h
|
||||
../../../../src/obiview.c
|
||||
../../../../src/hashtable.h
|
||||
../../../../src/hashtable.c
|
||||
../../../../src/linked_list.h
|
||||
../../../../src/linked_list.c
|
||||
../../../../src/obidmscolumn_array.h
|
||||
../../../../src/obidmscolumn_array.c
|
||||
../../../../src/obidmscolumn_blob.h
|
||||
../../../../src/obidmscolumn_blob.c
|
||||
../../../../src/obidmscolumn_idx.h
|
||||
../../../../src/obidmscolumn_idx.c
|
||||
../../../../src/obidmscolumn_bool.h
|
||||
../../../../src/obidmscolumn_bool.c
|
||||
../../../../src/obidmscolumn_char.h
|
||||
../../../../src/obidmscolumn_char.c
|
||||
../../../../src/obidmscolumn_float.h
|
||||
../../../../src/obidmscolumn_float.c
|
||||
../../../../src/obidmscolumn_int.h
|
||||
../../../../src/obidmscolumn_int.c
|
||||
../../../../src/obidmscolumn_qual.h
|
||||
../../../../src/obidmscolumn_qual.c
|
||||
../../../../src/obidmscolumn_seq.h
|
||||
../../../../src/obidmscolumn_seq.c
|
||||
../../../../src/obidmscolumn_str.h
|
||||
../../../../src/obidmscolumn_str.c
|
||||
../../../../src/array_indexer.h
|
||||
../../../../src/array_indexer.c
|
||||
../../../../src/char_str_indexer.h
|
||||
../../../../src/char_str_indexer.c
|
||||
../../../../src/dna_seq_indexer.h
|
||||
../../../../src/dna_seq_indexer.c
|
||||
../../../../src/encode.c
|
||||
../../../../src/encode.h
|
||||
../../../../src/uint8_indexer.c
|
||||
../../../../src/uint8_indexer.h
|
||||
../../../../src/build_reference_db.c
|
||||
../../../../src/build_reference_db.h
|
||||
../../../../src/kmer_similarity.c
|
||||
../../../../src/kmer_similarity.h
|
||||
../../../../src/obi_clean.c
|
||||
../../../../src/obi_clean.h
|
||||
../../../../src/obi_ecopcr.c
|
||||
../../../../src/obi_ecopcr.h
|
||||
../../../../src/obi_ecotag.c
|
||||
../../../../src/obi_ecotag.h
|
||||
../../../../src/obidms_taxonomy.c
|
||||
../../../../src/obidms_taxonomy.h
|
||||
../../../../src/obilittlebigman.c
|
||||
../../../../src/obilittlebigman.h
|
||||
../../../../src/_sse.h
|
||||
../../../../src/obidebug.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../src/libecoPCR/ecodna.c
|
||||
../../../../src/libecoPCR/ecoError.c
|
||||
../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../src/obi_lcs.h
|
||||
../../../../src/obi_lcs.c
|
||||
../../../../src/obierrno.h
|
||||
../../../../src/obierrno.c
|
||||
../../../../src/upperband.h
|
||||
../../../../src/upperband.c
|
||||
../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../src/obiblob.h
|
||||
../../../../src/obiblob.c
|
||||
../../../../src/utils.h
|
||||
../../../../src/utils.c
|
||||
../../../../src/obidms.h
|
||||
../../../../src/obidms.c
|
||||
../../../../src/libjson/json_utils.h
|
||||
../../../../src/libjson/json_utils.c
|
||||
../../../../src/libjson/cJSON.h
|
||||
../../../../src/libjson/cJSON.c
|
||||
../../../../src/obiavl.h
|
||||
../../../../src/obiavl.c
|
||||
../../../../src/bloom.h
|
||||
../../../../src/bloom.c
|
||||
../../../../src/crc64.h
|
||||
../../../../src/crc64.c
|
||||
../../../../src/murmurhash2.h
|
||||
../../../../src/murmurhash2.c
|
||||
../../../../src/obidmscolumn.h
|
||||
../../../../src/obidmscolumn.c
|
||||
../../../../src/obitypes.h
|
||||
../../../../src/obitypes.c
|
||||
../../../../src/obidmscolumndir.h
|
||||
../../../../src/obidmscolumndir.c
|
||||
../../../../src/obiblob_indexer.h
|
||||
../../../../src/obiblob_indexer.c
|
||||
../../../../src/obiview.h
|
||||
../../../../src/obiview.c
|
||||
../../../../src/hashtable.h
|
||||
../../../../src/hashtable.c
|
||||
../../../../src/linked_list.h
|
||||
../../../../src/linked_list.c
|
||||
../../../../src/obidmscolumn_array.h
|
||||
../../../../src/obidmscolumn_array.c
|
||||
../../../../src/obidmscolumn_blob.h
|
||||
../../../../src/obidmscolumn_blob.c
|
||||
../../../../src/obidmscolumn_idx.h
|
||||
../../../../src/obidmscolumn_idx.c
|
||||
../../../../src/obidmscolumn_bool.h
|
||||
../../../../src/obidmscolumn_bool.c
|
||||
../../../../src/obidmscolumn_char.h
|
||||
../../../../src/obidmscolumn_char.c
|
||||
../../../../src/obidmscolumn_float.h
|
||||
../../../../src/obidmscolumn_float.c
|
||||
../../../../src/obidmscolumn_int.h
|
||||
../../../../src/obidmscolumn_int.c
|
||||
../../../../src/obidmscolumn_qual.h
|
||||
../../../../src/obidmscolumn_qual.c
|
||||
../../../../src/obidmscolumn_seq.h
|
||||
../../../../src/obidmscolumn_seq.c
|
||||
../../../../src/obidmscolumn_str.h
|
||||
../../../../src/obidmscolumn_str.c
|
||||
../../../../src/array_indexer.h
|
||||
../../../../src/array_indexer.c
|
||||
../../../../src/char_str_indexer.h
|
||||
../../../../src/char_str_indexer.c
|
||||
../../../../src/dna_seq_indexer.h
|
||||
../../../../src/dna_seq_indexer.c
|
||||
../../../../src/encode.c
|
||||
../../../../src/encode.h
|
||||
../../../../src/uint8_indexer.c
|
||||
../../../../src/uint8_indexer.h
|
||||
../../../../src/build_reference_db.c
|
||||
../../../../src/build_reference_db.h
|
||||
../../../../src/kmer_similarity.c
|
||||
../../../../src/kmer_similarity.h
|
||||
../../../../src/obi_clean.c
|
||||
../../../../src/obi_clean.h
|
||||
../../../../src/obi_ecopcr.c
|
||||
../../../../src/obi_ecopcr.h
|
||||
../../../../src/obi_ecotag.c
|
||||
../../../../src/obi_ecotag.h
|
||||
../../../../src/obidms_taxonomy.c
|
||||
../../../../src/obidms_taxonomy.h
|
||||
../../../../src/obilittlebigman.c
|
||||
../../../../src/obilittlebigman.h
|
||||
../../../../src/_sse.h
|
||||
../../../../src/obidebug.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../src/libecoPCR/ecodna.c
|
||||
../../../../src/libecoPCR/ecoError.c
|
||||
../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../../src/obi_lcs.h
|
||||
../../../../../src/obi_lcs.c
|
||||
../../../../../src/obierrno.h
|
||||
../../../../../src/obierrno.c
|
||||
../../../../../src/upperband.h
|
||||
../../../../../src/upperband.c
|
||||
../../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../../src/obiblob.h
|
||||
../../../../../src/obiblob.c
|
||||
../../../../../src/utils.h
|
||||
../../../../../src/utils.c
|
||||
../../../../../src/obidms.h
|
||||
../../../../../src/obidms.c
|
||||
../../../../../src/libjson/json_utils.h
|
||||
../../../../../src/libjson/json_utils.c
|
||||
../../../../../src/libjson/cJSON.h
|
||||
../../../../../src/libjson/cJSON.c
|
||||
../../../../../src/obiavl.h
|
||||
../../../../../src/obiavl.c
|
||||
../../../../../src/bloom.h
|
||||
../../../../../src/bloom.c
|
||||
../../../../../src/crc64.h
|
||||
../../../../../src/crc64.c
|
||||
../../../../../src/murmurhash2.h
|
||||
../../../../../src/murmurhash2.c
|
||||
../../../../../src/obidmscolumn.h
|
||||
../../../../../src/obidmscolumn.c
|
||||
../../../../../src/obitypes.h
|
||||
../../../../../src/obitypes.c
|
||||
../../../../../src/obidmscolumndir.h
|
||||
../../../../../src/obidmscolumndir.c
|
||||
../../../../../src/obiblob_indexer.h
|
||||
../../../../../src/obiblob_indexer.c
|
||||
../../../../../src/obiview.h
|
||||
../../../../../src/obiview.c
|
||||
../../../../../src/hashtable.h
|
||||
../../../../../src/hashtable.c
|
||||
../../../../../src/linked_list.h
|
||||
../../../../../src/linked_list.c
|
||||
../../../../../src/obidmscolumn_array.h
|
||||
../../../../../src/obidmscolumn_array.c
|
||||
../../../../../src/obidmscolumn_blob.h
|
||||
../../../../../src/obidmscolumn_blob.c
|
||||
../../../../../src/obidmscolumn_idx.h
|
||||
../../../../../src/obidmscolumn_idx.c
|
||||
../../../../../src/obidmscolumn_bool.h
|
||||
../../../../../src/obidmscolumn_bool.c
|
||||
../../../../../src/obidmscolumn_char.h
|
||||
../../../../../src/obidmscolumn_char.c
|
||||
../../../../../src/obidmscolumn_float.h
|
||||
../../../../../src/obidmscolumn_float.c
|
||||
../../../../../src/obidmscolumn_int.h
|
||||
../../../../../src/obidmscolumn_int.c
|
||||
../../../../../src/obidmscolumn_qual.h
|
||||
../../../../../src/obidmscolumn_qual.c
|
||||
../../../../../src/obidmscolumn_seq.h
|
||||
../../../../../src/obidmscolumn_seq.c
|
||||
../../../../../src/obidmscolumn_str.h
|
||||
../../../../../src/obidmscolumn_str.c
|
||||
../../../../../src/array_indexer.h
|
||||
../../../../../src/array_indexer.c
|
||||
../../../../../src/char_str_indexer.h
|
||||
../../../../../src/char_str_indexer.c
|
||||
../../../../../src/dna_seq_indexer.h
|
||||
../../../../../src/dna_seq_indexer.c
|
||||
../../../../../src/encode.c
|
||||
../../../../../src/encode.h
|
||||
../../../../../src/uint8_indexer.c
|
||||
../../../../../src/uint8_indexer.h
|
||||
../../../../../src/build_reference_db.c
|
||||
../../../../../src/build_reference_db.h
|
||||
../../../../../src/kmer_similarity.c
|
||||
../../../../../src/kmer_similarity.h
|
||||
../../../../../src/obi_clean.c
|
||||
../../../../../src/obi_clean.h
|
||||
../../../../../src/obi_ecopcr.c
|
||||
../../../../../src/obi_ecopcr.h
|
||||
../../../../../src/obi_ecotag.c
|
||||
../../../../../src/obi_ecotag.h
|
||||
../../../../../src/obidms_taxonomy.c
|
||||
../../../../../src/obidms_taxonomy.h
|
||||
../../../../../src/obilittlebigman.c
|
||||
../../../../../src/obilittlebigman.h
|
||||
../../../../../src/_sse.h
|
||||
../../../../../src/obidebug.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../../src/libecoPCR/ecodna.c
|
||||
../../../../../src/libecoPCR/ecoError.c
|
||||
../../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../../src/obi_lcs.h
|
||||
../../../../src/obi_lcs.c
|
||||
../../../../src/obierrno.h
|
||||
../../../../src/obierrno.c
|
||||
../../../../src/upperband.h
|
||||
../../../../src/upperband.c
|
||||
../../../../src/sse_banded_LCS_alignment.h
|
||||
../../../../src/sse_banded_LCS_alignment.c
|
||||
../../../../src/obiblob.h
|
||||
../../../../src/obiblob.c
|
||||
../../../../src/utils.h
|
||||
../../../../src/utils.c
|
||||
../../../../src/obidms.h
|
||||
../../../../src/obidms.c
|
||||
../../../../src/libjson/json_utils.h
|
||||
../../../../src/libjson/json_utils.c
|
||||
../../../../src/libjson/cJSON.h
|
||||
../../../../src/libjson/cJSON.c
|
||||
../../../../src/obiavl.h
|
||||
../../../../src/obiavl.c
|
||||
../../../../src/bloom.h
|
||||
../../../../src/bloom.c
|
||||
../../../../src/crc64.h
|
||||
../../../../src/crc64.c
|
||||
../../../../src/murmurhash2.h
|
||||
../../../../src/murmurhash2.c
|
||||
../../../../src/obidmscolumn.h
|
||||
../../../../src/obidmscolumn.c
|
||||
../../../../src/obitypes.h
|
||||
../../../../src/obitypes.c
|
||||
../../../../src/obidmscolumndir.h
|
||||
../../../../src/obidmscolumndir.c
|
||||
../../../../src/obiblob_indexer.h
|
||||
../../../../src/obiblob_indexer.c
|
||||
../../../../src/obiview.h
|
||||
../../../../src/obiview.c
|
||||
../../../../src/hashtable.h
|
||||
../../../../src/hashtable.c
|
||||
../../../../src/linked_list.h
|
||||
../../../../src/linked_list.c
|
||||
../../../../src/obidmscolumn_array.h
|
||||
../../../../src/obidmscolumn_array.c
|
||||
../../../../src/obidmscolumn_blob.h
|
||||
../../../../src/obidmscolumn_blob.c
|
||||
../../../../src/obidmscolumn_idx.h
|
||||
../../../../src/obidmscolumn_idx.c
|
||||
../../../../src/obidmscolumn_bool.h
|
||||
../../../../src/obidmscolumn_bool.c
|
||||
../../../../src/obidmscolumn_char.h
|
||||
../../../../src/obidmscolumn_char.c
|
||||
../../../../src/obidmscolumn_float.h
|
||||
../../../../src/obidmscolumn_float.c
|
||||
../../../../src/obidmscolumn_int.h
|
||||
../../../../src/obidmscolumn_int.c
|
||||
../../../../src/obidmscolumn_qual.h
|
||||
../../../../src/obidmscolumn_qual.c
|
||||
../../../../src/obidmscolumn_seq.h
|
||||
../../../../src/obidmscolumn_seq.c
|
||||
../../../../src/obidmscolumn_str.h
|
||||
../../../../src/obidmscolumn_str.c
|
||||
../../../../src/array_indexer.h
|
||||
../../../../src/array_indexer.c
|
||||
../../../../src/char_str_indexer.h
|
||||
../../../../src/char_str_indexer.c
|
||||
../../../../src/dna_seq_indexer.h
|
||||
../../../../src/dna_seq_indexer.c
|
||||
../../../../src/encode.c
|
||||
../../../../src/encode.h
|
||||
../../../../src/uint8_indexer.c
|
||||
../../../../src/uint8_indexer.h
|
||||
../../../../src/build_reference_db.c
|
||||
../../../../src/build_reference_db.h
|
||||
../../../../src/kmer_similarity.c
|
||||
../../../../src/kmer_similarity.h
|
||||
../../../../src/obi_clean.c
|
||||
../../../../src/obi_clean.h
|
||||
../../../../src/obi_ecopcr.c
|
||||
../../../../src/obi_ecopcr.h
|
||||
../../../../src/obi_ecotag.c
|
||||
../../../../src/obi_ecotag.h
|
||||
../../../../src/obidms_taxonomy.c
|
||||
../../../../src/obidms_taxonomy.h
|
||||
../../../../src/obilittlebigman.c
|
||||
../../../../src/obilittlebigman.h
|
||||
../../../../src/_sse.h
|
||||
../../../../src/obidebug.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../../src/libecoPCR/libapat/apat.h
|
||||
../../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../../src/libecoPCR/ecoapat.c
|
||||
../../../../src/libecoPCR/ecodna.c
|
||||
../../../../src/libecoPCR/ecoError.c
|
||||
../../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../src/obi_lcs.h
|
||||
../../src/obi_lcs.c
|
||||
../../src/obierrno.h
|
||||
../../src/obierrno.c
|
||||
../../src/upperband.h
|
||||
../../src/upperband.c
|
||||
../../src/sse_banded_LCS_alignment.h
|
||||
../../src/sse_banded_LCS_alignment.c
|
||||
../../src/obiblob.h
|
||||
../../src/obiblob.c
|
||||
../../src/utils.h
|
||||
../../src/utils.c
|
||||
../../src/obidms.h
|
||||
../../src/obidms.c
|
||||
../../src/libjson/json_utils.h
|
||||
../../src/libjson/json_utils.c
|
||||
../../src/libjson/cJSON.h
|
||||
../../src/libjson/cJSON.c
|
||||
../../src/obiavl.h
|
||||
../../src/obiavl.c
|
||||
../../src/bloom.h
|
||||
../../src/bloom.c
|
||||
../../src/crc64.h
|
||||
../../src/crc64.c
|
||||
../../src/murmurhash2.h
|
||||
../../src/murmurhash2.c
|
||||
../../src/obidmscolumn.h
|
||||
../../src/obidmscolumn.c
|
||||
../../src/obitypes.h
|
||||
../../src/obitypes.c
|
||||
../../src/obidmscolumndir.h
|
||||
../../src/obidmscolumndir.c
|
||||
../../src/obiblob_indexer.h
|
||||
../../src/obiblob_indexer.c
|
||||
../../src/obiview.h
|
||||
../../src/obiview.c
|
||||
../../src/hashtable.h
|
||||
../../src/hashtable.c
|
||||
../../src/linked_list.h
|
||||
../../src/linked_list.c
|
||||
../../src/obidmscolumn_array.h
|
||||
../../src/obidmscolumn_array.c
|
||||
../../src/obidmscolumn_blob.h
|
||||
../../src/obidmscolumn_blob.c
|
||||
../../src/obidmscolumn_idx.h
|
||||
../../src/obidmscolumn_idx.c
|
||||
../../src/obidmscolumn_bool.h
|
||||
../../src/obidmscolumn_bool.c
|
||||
../../src/obidmscolumn_char.h
|
||||
../../src/obidmscolumn_char.c
|
||||
../../src/obidmscolumn_float.h
|
||||
../../src/obidmscolumn_float.c
|
||||
../../src/obidmscolumn_int.h
|
||||
../../src/obidmscolumn_int.c
|
||||
../../src/obidmscolumn_qual.h
|
||||
../../src/obidmscolumn_qual.c
|
||||
../../src/obidmscolumn_seq.h
|
||||
../../src/obidmscolumn_seq.c
|
||||
../../src/obidmscolumn_str.h
|
||||
../../src/obidmscolumn_str.c
|
||||
../../src/array_indexer.h
|
||||
../../src/array_indexer.c
|
||||
../../src/char_str_indexer.h
|
||||
../../src/char_str_indexer.c
|
||||
../../src/dna_seq_indexer.h
|
||||
../../src/dna_seq_indexer.c
|
||||
../../src/encode.c
|
||||
../../src/encode.h
|
||||
../../src/uint8_indexer.c
|
||||
../../src/uint8_indexer.h
|
||||
../../src/build_reference_db.c
|
||||
../../src/build_reference_db.h
|
||||
../../src/kmer_similarity.c
|
||||
../../src/kmer_similarity.h
|
||||
../../src/obi_clean.c
|
||||
../../src/obi_clean.h
|
||||
../../src/obi_ecopcr.c
|
||||
../../src/obi_ecopcr.h
|
||||
../../src/obi_ecotag.c
|
||||
../../src/obi_ecotag.h
|
||||
../../src/obidms_taxonomy.c
|
||||
../../src/obidms_taxonomy.h
|
||||
../../src/obilittlebigman.c
|
||||
../../src/obilittlebigman.h
|
||||
../../src/_sse.h
|
||||
../../src/obidebug.h
|
||||
../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../src/libecoPCR/libapat/apat_search.c
|
||||
../../src/libecoPCR/libapat/apat.h
|
||||
../../src/libecoPCR/libapat/Gmach.h
|
||||
../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../src/libecoPCR/libapat/libstki.c
|
||||
../../src/libecoPCR/libapat/libstki.h
|
||||
../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../src/libecoPCR/ecoapat.c
|
||||
../../src/libecoPCR/ecodna.c
|
||||
../../src/libecoPCR/ecoError.c
|
||||
../../src/libecoPCR/ecoMalloc.c
|
||||
../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@ -1,110 +0,0 @@
|
||||
../../../src/obi_lcs.h
|
||||
../../../src/obi_lcs.c
|
||||
../../../src/obierrno.h
|
||||
../../../src/obierrno.c
|
||||
../../../src/upperband.h
|
||||
../../../src/upperband.c
|
||||
../../../src/sse_banded_LCS_alignment.h
|
||||
../../../src/sse_banded_LCS_alignment.c
|
||||
../../../src/obiblob.h
|
||||
../../../src/obiblob.c
|
||||
../../../src/utils.h
|
||||
../../../src/utils.c
|
||||
../../../src/obidms.h
|
||||
../../../src/obidms.c
|
||||
../../../src/libjson/json_utils.h
|
||||
../../../src/libjson/json_utils.c
|
||||
../../../src/libjson/cJSON.h
|
||||
../../../src/libjson/cJSON.c
|
||||
../../../src/obiavl.h
|
||||
../../../src/obiavl.c
|
||||
../../../src/bloom.h
|
||||
../../../src/bloom.c
|
||||
../../../src/crc64.h
|
||||
../../../src/crc64.c
|
||||
../../../src/murmurhash2.h
|
||||
../../../src/murmurhash2.c
|
||||
../../../src/obidmscolumn.h
|
||||
../../../src/obidmscolumn.c
|
||||
../../../src/obitypes.h
|
||||
../../../src/obitypes.c
|
||||
../../../src/obidmscolumndir.h
|
||||
../../../src/obidmscolumndir.c
|
||||
../../../src/obiblob_indexer.h
|
||||
../../../src/obiblob_indexer.c
|
||||
../../../src/obiview.h
|
||||
../../../src/obiview.c
|
||||
../../../src/hashtable.h
|
||||
../../../src/hashtable.c
|
||||
../../../src/linked_list.h
|
||||
../../../src/linked_list.c
|
||||
../../../src/obidmscolumn_array.h
|
||||
../../../src/obidmscolumn_array.c
|
||||
../../../src/obidmscolumn_blob.h
|
||||
../../../src/obidmscolumn_blob.c
|
||||
../../../src/obidmscolumn_idx.h
|
||||
../../../src/obidmscolumn_idx.c
|
||||
../../../src/obidmscolumn_bool.h
|
||||
../../../src/obidmscolumn_bool.c
|
||||
../../../src/obidmscolumn_char.h
|
||||
../../../src/obidmscolumn_char.c
|
||||
../../../src/obidmscolumn_float.h
|
||||
../../../src/obidmscolumn_float.c
|
||||
../../../src/obidmscolumn_int.h
|
||||
../../../src/obidmscolumn_int.c
|
||||
../../../src/obidmscolumn_qual.h
|
||||
../../../src/obidmscolumn_qual.c
|
||||
../../../src/obidmscolumn_seq.h
|
||||
../../../src/obidmscolumn_seq.c
|
||||
../../../src/obidmscolumn_str.h
|
||||
../../../src/obidmscolumn_str.c
|
||||
../../../src/array_indexer.h
|
||||
../../../src/array_indexer.c
|
||||
../../../src/char_str_indexer.h
|
||||
../../../src/char_str_indexer.c
|
||||
../../../src/dna_seq_indexer.h
|
||||
../../../src/dna_seq_indexer.c
|
||||
../../../src/encode.c
|
||||
../../../src/encode.h
|
||||
../../../src/uint8_indexer.c
|
||||
../../../src/uint8_indexer.h
|
||||
../../../src/build_reference_db.c
|
||||
../../../src/build_reference_db.h
|
||||
../../../src/kmer_similarity.c
|
||||
../../../src/kmer_similarity.h
|
||||
../../../src/obi_clean.c
|
||||
../../../src/obi_clean.h
|
||||
../../../src/obi_ecopcr.c
|
||||
../../../src/obi_ecopcr.h
|
||||
../../../src/obi_ecotag.c
|
||||
../../../src/obi_ecotag.h
|
||||
../../../src/obidms_taxonomy.c
|
||||
../../../src/obidms_taxonomy.h
|
||||
../../../src/obilittlebigman.c
|
||||
../../../src/obilittlebigman.h
|
||||
../../../src/_sse.h
|
||||
../../../src/obidebug.h
|
||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
||||
../../../src/libecoPCR/libapat/apat_parse.c
|
||||
../../../src/libecoPCR/libapat/apat_search.c
|
||||
../../../src/libecoPCR/libapat/apat.h
|
||||
../../../src/libecoPCR/libapat/Gmach.h
|
||||
../../../src/libecoPCR/libapat/Gtypes.h
|
||||
../../../src/libecoPCR/libapat/libstki.c
|
||||
../../../src/libecoPCR/libapat/libstki.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.h
|
||||
../../../src/libecoPCR/libthermo/nnparams.c
|
||||
../../../src/libecoPCR/ecoapat.c
|
||||
../../../src/libecoPCR/ecodna.c
|
||||
../../../src/libecoPCR/ecoError.c
|
||||
../../../src/libecoPCR/ecoMalloc.c
|
||||
../../../src/libecoPCR/ecoPCR.h
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
Reference in New Issue
Block a user