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First implementation of taxonomy reading

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This commit is contained in:
Celine Mercier
2016-03-11 13:56:38 +01:00
parent a08def47e6
commit 21d1b2ed3e
11 changed files with 960 additions and 2 deletions
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9
python/obitools3/obidms/_obidms.pyx
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@ -26,6 +26,8 @@ from ._obidms cimport OBIDMS, \
OBIView, \
OBIView_line
from ._obitaxo cimport OBI_Taxonomy
from ._obiseq cimport OBI_Nuc_Seq, OBI_Nuc_Seq_Stored
from ._obidmscolumn_int cimport OBIDMS_column_int, \
@ -243,7 +245,8 @@ cdef class OBIView :
cdef OBIDMS_column_p* column_pp
cdef OBIDMS_column_header_p header
cdef index_t* line_selection_p
cdef object col_capsule
self.dms = dms
if line_selection is not None :
@ -649,6 +652,10 @@ cdef class OBIDMS :
if (obi_close_dms(self.pointer)) < 0 :
raise Exception("Problem closing an OBIDMS")
cpdef OBI_Taxonomy open_taxonomy(self, str taxo_name) :
return OBI_Taxonomy(self, taxo_name)
cpdef OBIView open_view(self, str view_name) :