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Changed sequence 'description' to 'definition' everywhere

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This commit is contained in:
Celine Mercier
2016-04-15 16:31:43 +02:00
parent 094b2371e9
commit 2aafecc3b5
10 changed files with 30 additions and 30 deletions
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6
python/obitools3/obidms/_obidms.pyx
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@ -69,7 +69,7 @@ from .capi.obiview cimport Obiview_p, \
VIEW_TYPE_NUC_SEQS, \
NUC_SEQUENCE_COLUMN, \
ID_COLUMN, \
DESCRIPTION_COLUMN
DEFINITION_COLUMN
from libc.stdlib cimport malloc
from cpython.pycapsule cimport PyCapsule_New, PyCapsule_GetPointer
@ -529,7 +529,7 @@ cdef class OBIView_NUC_SEQS(OBIView):
self.ids = self.columns[bytes2str(ID_COLUMN)]
self.sequences = self.columns[bytes2str(NUC_SEQUENCE_COLUMN)]
self.descriptions = self.columns[bytes2str(DESCRIPTION_COLUMN)]
self.definitions = self.columns[bytes2str(DEFINITION_COLUMN)]
cpdef delete_column(self, str column_name) :
@ -542,7 +542,7 @@ cdef class OBIView_NUC_SEQS(OBIView):
cdef OBIDMS_column_header_p header
cdef str column_n
if ((column_name == bytes2str(ID_COLUMN)) or (column_name == bytes2str(NUC_SEQUENCE_COLUMN)) or (column_name == bytes2str(DESCRIPTION_COLUMN))) :
if ((column_name == bytes2str(ID_COLUMN)) or (column_name == bytes2str(NUC_SEQUENCE_COLUMN)) or (column_name == bytes2str(DEFINITION_COLUMN))) :
raise Exception("Can't delete an obligatory column from a NUC_SEQS view")
view = self.pointer