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Added function to build kmer table for 2 columns, and fixed bug (with

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line count) when building kmer table of one column
This commit is contained in:
Celine Mercier
2016-12-16 19:10:18 +01:00
parent 490f5fe6b9
commit 303bd6f445
2 changed files with 43 additions and 3 deletions
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4
src/upperband.h
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@ -18,7 +18,11 @@ typedef struct {
} Kmer_table_t, *Kmer_table_p;
// TODO doc
Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t seq_idx);
Kmer_table_p hash_two_seq_columns(Obiview_p view1, OBIDMS_column_p seq1_col, index_t seq1_idx,
Obiview_p view2, OBIDMS_column_p seq2_col, index_t seq2_idx);
void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_t idx1, index_t idx2, double threshold, bool normalize, int reference, bool similarity_mode, double* score, int* LCSmin, bool can_be_identical);
void free_kmer_tables(Kmer_table_p ktable, size_t count);