All commands now handle outputing to another DMS + small fixes

2018-11-02 19:03:09 +01:00
parent 8a8e9e50b2
commit 35f3e7c30b
10 changed files with 266 additions and 153 deletions
--- a/python/obitools3/commands/stats.pyx
+++ b/python/obitools3/commands/stats.pyx
@ -143,7 +143,7 @@ def run(config):
        raise Exception("Could not read input view")
    i_view = input[1]

-    if 'taxoURI' in config['obi'] :   # TODO default None problem
+    if 'taxoURI' in config['obi'] and config['obi']['taxoURI'] is not None:
        taxo_uri = open_uri(config['obi']['taxoURI'])
        if taxo_uri is None:
            raise Exception("Couldn't open taxonomy")