Improved progress display when importing files in a DMS

python/obitools3/commands/import.pyx

@@ -99,6 +99,7 @@ def run(config):
     logger("info", "obi import: imports an object (file(s), obiview, taxonomy...) into a DMS")
     
     entry_count = -1
+    pb = None
     
     if not config['obi']['taxdump']:
         input = open_uri(config['obi']['inputURI'])
@@ -110,7 +111,10 @@ def run(config):
         else:
             entry_count = input[4]
         
-        logger("info", "Importing %d entries", entry_count)
+        if entry_count > 0:
+            logger("info", "Importing %d entries", entry_count)
+        else:
+            logger("info", "Importing an unknow number of entries")
         
         # TODO a bit dirty?
         if input[2]==Nuc_Seq or input[2]==View_NUC_SEQS:
@@ -137,8 +141,6 @@ def run(config):
     
     if entry_count >= 0:
         pb = ProgressBar(entry_count, config, seconde=5)
-    else:
-        pb = None
     
     entries = input[1]
         
@@ -170,6 +172,9 @@ def run(config):
         
         if pb is not None:
             pb(i)
+        elif not i%50000:
+            logger("info", "Imported %d entries", i)
+
                         
         if NUC_SEQS_view: 
             id_col[i] = entry.id