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Cython: made fasta formatter cleaner

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This commit is contained in:
Celine Mercier
2019-03-31 15:41:32 +02:00
parent 26fb149efb
commit 416c2d7ba0
1 changed files with 2 additions and 2 deletions
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4
python/obitools3/format/header.pyx
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@ -6,7 +6,7 @@ from obitools3.dms.capi.obiview cimport NUC_SEQUENCE_COLUMN, \
QUALITY_COLUMN, \ QUALITY_COLUMN, \
COUNT_COLUMN COUNT_COLUMN
from obitools3.utils cimport str2bytes from obitools3.utils cimport str2bytes, bytes2str_object
from obitools3.dms.column.column cimport Column_line from obitools3.dms.column.column cimport Column_line
@ -63,7 +63,7 @@ cdef class HeaderFormat:
if type(value) == Column_line: if type(value) == Column_line:
value = value.bytes() value = value.bytes()
else: else:
value = str2bytes(str(value)) # TODO ugly but how else? value = str2bytes(str(bytes2str_object(value))) # genius programming
if value is not None: if value is not None:
lines.append(k + b"=" + value + b";") lines.append(k + b"=" + value + b";")