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ecotag: clarified similarity circle documentation

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Celine Mercier
2020-09-29 17:57:29 +02:00
parent 137c109f86
commit 422a6450fa
1 changed files with 1 additions and 1 deletions
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python/obitools3/commands/ecotag.pyx
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@ -48,7 +48,7 @@ def addOptions(parser):
type=float, type=float,
help="Minimum identity considered for the assignment circle " help="Minimum identity considered for the assignment circle "
"(sequence is assigned to the LCA of all sequences within a similarity circle of the best matches; " "(sequence is assigned to the LCA of all sequences within a similarity circle of the best matches; "
"the threshold for this circle is the highest value between <CIRCLE_THRESHOLD> and the best assignment score found). " "the threshold for this circle is the highest value between <CIRCLE_THRESHOLD> and the best assignment score found for the query sequence). "
"Give value as a normalized identity, e.g. 0.95 for an identity of 95%%. " "Give value as a normalized identity, e.g. 0.95 for an identity of 95%%. "
"Default: 0.99.") "Default: 0.99.")