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obi arrays that don't work because of cython bug passing wrong pointers

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This commit is contained in:
Celine Mercier
2015-11-03 14:22:00 +01:00
parent ecb9d97adb
commit 456551ffeb
25 changed files with 1669 additions and 128 deletions
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13
src/obidmscolumn.h
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@ -25,19 +25,21 @@
#include "obierrno.h"
#include "obilittlebigman.h"
#include "obidmscolumndir.h"
#include "obiarray.h"
#define ONE_IF_ZERO(x) (((x)==0)?1:(x)) /**< If x is equal to 0, x takes the value 1.
*/
#define ELEMENTS_NAMES_MAX (2048) /**< The maximum length of the list of elements names.
*/
#define GROWTH_FACTOR (2) /**< The growth factor when a column is enlarged.
#define COLUMN_GROWTH_FACTOR (2) /**< The growth factor when a column is enlarged.
*/
#define MAXIMUM_LINE_COUNT (1000000) /**< The maximum line count for the data of a column. //TODO
*/
#define FORMATTED_TIME_LENGTH (1024) /**< The length allocated for the character string containing a formatted date
*/
typedef int32_t obiversion_t; /**< Used to store the column version number
*/
@ -74,6 +76,8 @@ typedef struct OBIDMS_column_header {
*/
char name[OBIDMS_COLUMN_MAX_NAME+1]; /**< The column name as a NULL terminated string.
*/
char array_name[ARRAY_MAX_NAME+1]; /**< If there is one, the obi_array name as a NULL terminated string.
*/
char comments[1]; /**< Comments stored as a classical zero end C string.
* The size of the comment is only limited by the header size.
*/
@ -93,6 +97,8 @@ typedef struct OBIDMS_column {
*/
OBIDMS_column_header_p header; /**< A pointer to the header of the column.
*/
OBIDMS_array_p array; /**< A pointer to the array associated with the column if there is one.
*/
void* data; /**< A `void` pointer to the beginning of the data.
*
* @warning Never use this member directly outside of the code of the
@ -172,11 +178,12 @@ size_t obi_get_platform_header_size();
* @author Eric Coissac (eric.coissac@metabarcoding.org)
*/
OBIDMS_column_p obi_create_column(OBIDMS_p dms,
const char* column_name,
const char* column_name,
OBIType_t data_type,
size_t nb_lines,
size_t nb_elements_per_line,
const char* elements_names);
const char* elements_names,
const char* array_name);
/**