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Cleaner stderr prints

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This commit is contained in:
Celine Mercier
2019-03-13 18:36:31 +01:00
parent e3c565d6be
commit 478d19ab43
15 changed files with 79 additions and 37 deletions
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10
python/obitools3/commands/annotate.pyx
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@ -356,6 +356,9 @@ def run(config):
except Exception, e:
raise RollbackException("obi annotate error, rollbacking view: "+str(e), o_view)
pb(i, force=True)
print("", file=sys.stderr)
# Save command config in View and DMS comments
command_line = " ".join(sys.argv[1:])
@ -367,12 +370,13 @@ def run(config):
o_view.write_config(config, "annotate", command_line, input_dms_name=input_dms_name, input_view_name=input_view_name)
output[0].record_command_line(command_line)
print("\n")
print(repr(o_view))
#print("\n\nOutput view:\n````````````", file=sys.stderr)
#print(repr(o_view), file=sys.stderr)
# If the input and the output DMS are different, delete the temporary imported view used to create the final view
if i_dms != o_dms:
View.delete_view(o_dms, imported_view_name)
o_dms.close()
i_dms.close()
logger("info", "Done.")