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Cython API: fixed 2 little bugs in Seq API

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This commit is contained in:
Celine Mercier
2017-08-20 17:39:30 +02:00
parent 74f15d1a23
commit 47cad285d6
1 changed files with 2 additions and 3 deletions
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5
python/obitools3/dms/obiseq.pyx
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@ -21,7 +21,7 @@ cdef class Seq(dict) :
if tags is not None : if tags is not None :
for k in tags: for k in tags:
k_b = tobytes(k) k_b = tobytes(k)
self[k_b] = tags[k_b] self[k_b] = tags[k]
def __contains__(self, object key): def __contains__(self, object key):
@ -70,11 +70,10 @@ cdef class Nuc_Seq(Seq) :
# nuc sequence property getter and setter # nuc sequence property getter and setter
@property @property
def seq(self): def seq(self):
return self._seq return self[NUC_SEQUENCE_COLUMN]
@seq.setter @seq.setter
def seq(self, object new_seq): # @DuplicatedSignature def seq(self, object new_seq): # @DuplicatedSignature
self._seq = new_seq
self[NUC_SEQUENCE_COLUMN] = tobytes(new_seq) self[NUC_SEQUENCE_COLUMN] = tobytes(new_seq)
# sequence quality property getter and setter # sequence quality property getter and setter