all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00
parent eef5156d95
commit 4d0299904e
16 changed files with 31 additions and 26 deletions
--- a/python/obitools3/commands/alignpairedend.pyx
+++ b/python/obitools3/commands/alignpairedend.pyx
@ -247,10 +247,10 @@ def run(config):
    #print("\n\nOutput view:\n````````````", file=sys.stderr)
    #print(repr(view), file=sys.stderr)
    
-    input[0].close()
+    input[0].close(force=True)
    if two_views:
-        rinput[0].close()
-    output[0].close()
+        rinput[0].close(force=True)
+    output[0].close(force=True)

    logger("info", "Done.")