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Cython: rearranged input and output format options to have both and

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updated commands accordingly
This commit is contained in:
Celine Mercier
2018-10-17 11:19:48 +02:00
parent e6bbe13d81
commit 58589e04be
11 changed files with 120 additions and 77 deletions
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4
python/obitools3/commands/grep.pyx
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@ -4,7 +4,7 @@ from obitools3.apps.progress cimport ProgressBar # @UnresolvedImport
from obitools3.dms import DMS
from obitools3.dms.view.view cimport View, Line_selection
from obitools3.uri.decode import open_uri
from obitools3.apps.optiongroups import addMinimalInputOption, addTaxonomyInputOption, addMinimalOutputOption
from obitools3.apps.optiongroups import addMinimalInputOption, addTaxonomyOption, addMinimalOutputOption
from obitools3.dms.view import RollbackException
from obitools3.apps.config import logger
from obitools3.utils cimport tobytes
@ -24,7 +24,7 @@ __title__="Grep view lines that match the given predicates"
def addOptions(parser):
addMinimalInputOption(parser)
addTaxonomyInputOption(parser)
addTaxonomyOption(parser)
addMinimalOutputOption(parser)
group=parser.add_argument_group("obi grep specific options")