obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

obi uniq: added taxonomy handling

Browse Source
This commit is contained in:
Celine Mercier
2017-10-04 16:13:07 +02:00
parent 9fc6868341
commit 5ddd1d9ae6
2 changed files with 193 additions and 62 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
python/obitools3/commands/uniq.pxd
View File

@ -5,4 +5,5 @@ from obitools3.dms.taxo.taxo cimport Taxonomy
from obitools3.dms.view.typed_view.view_NUC_SEQS cimport View_NUC_SEQS
cdef uniqSequence(View_NUC_SEQS view, View_NUC_SEQS o_view, ProgressBar pb, list mergedKeys_list=*, Taxonomy taxonomy=*, bint mergeIds=*, list categories=*)
cdef merge_taxonomy_classification(View_NUC_SEQS o_view, Taxonomy taxonomy)
cdef uniq_sequences(View_NUC_SEQS view, View_NUC_SEQS o_view, ProgressBar pb, list mergedKeys_list=*, Taxonomy taxonomy=*, bint mergeIds=*, list categories=*)