DNA sequences are now encoded on 4 bits when they are in IUPAC

2015-11-20 15:32:09 +01:00
parent 87044b41d8
commit 6aa2f92930
5 changed files with 318 additions and 54 deletions
--- a/python/obitools3/unit_tests.py
+++ b/python/obitools3/unit_tests.py
@ -65,7 +65,7 @@ def random_obivalue(data_type):
        return randoms
    elif data_type == "OBI_SEQ" :
        length = randint(1,200)
-        randoms = ''.join(choice("atgc") for i in range(length))
+        randoms = ''.join(choice("atgcryswkmdbhvn") for i in range(length))
        return randoms

 class OBIDMS_Column_TestCase(unittest.TestCase):