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New column type for DNA sequences. Only for those coded on 2 bits (only

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'ATGCatgc') for now.
This commit is contained in:
Celine Mercier
2015-11-19 18:12:48 +01:00
parent e371248567
commit 6ab1c83302
17 changed files with 860 additions and 29 deletions
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5
src/obitypes.h
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@ -44,7 +44,8 @@ typedef enum OBIType {
OBI_FLOAT, /**< a floating value (C type : double) */
OBI_BOOL, /**< a boolean true/false value, see obibool_t enum */
OBI_CHAR, /**< a character (C type : char) */
OBI_IDX /**< an index in a data structure (C type : int64_t) */
OBI_STR, /**< an index in a data structure (C type : int64_t) referring to a character string*/
OBI_SEQ /**< an index in a data structure (C type : int64_t) referring to a DNA sequence*/
} OBIType_t, *OBIType_p;
@ -52,7 +53,7 @@ typedef int64_t index_t;
typedef int32_t obiint_t;
typedef double obifloat_t;
typedef char obichar_t;
// TODO same for obistr_t and obiseq_t ?
/**
* @brief Union used to compute the NA value of the OBI_FLOAT OBIType.