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cat: fixed the handling of dictionary columns

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mercierc
2021-06-01 09:06:13 +12:00
parent 47691a8f58
commit 6b7b0e3bd1
1 changed files with 1 additions and 1 deletions
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python/obitools3/commands/cat.pyx
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@ -97,7 +97,7 @@ def run(config):
Column.new_column(o_view, REVERSE_QUALITY_COLUMN, OBI_QUAL, associated_column_name=REVERSE_SEQUENCE_COLUMN, associated_column_version=o_view[REVERSE_SEQUENCE_COLUMN].version) Column.new_column(o_view, REVERSE_QUALITY_COLUMN, OBI_QUAL, associated_column_name=REVERSE_SEQUENCE_COLUMN, associated_column_version=o_view[REVERSE_SEQUENCE_COLUMN].version)
# Initialize multiple elements columns # Initialize multiple elements columns
if type(output_0)==BufferedWriter: if type(output_0)!=BufferedWriter:
dict_cols = {} dict_cols = {}
for v_uri in config["cat"]["views_to_cat"]: for v_uri in config["cat"]["views_to_cat"]:
v = open_uri(v_uri)[1] v = open_uri(v_uri)[1]