Bug fixes for input handlers, openers, parsers etc. Compiling but not

tested
This commit is contained in:
Celine Mercier
2017-07-27 19:42:44 +02:00
parent b2fc1f4611
commit 7112f44fb7
4 changed files with 32 additions and 17 deletions

View File

@ -6,11 +6,14 @@ Created on 30 mars 2016
@author: coissac
'''
from obitools3.dms.obiseq import Nuc_Seq
def fastqIterator(lineiterator,
int skip=0,
only=None,
int qualityoffset=-1,
bool noquality=False,
bint noquality=False,
firstline=None,
int buffersize=100000000
):

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@ -0,0 +1,7 @@
#cython: language_level=3
from ..utils cimport str2bytes
from ..files.universalopener cimport uopen
from ..files.linebuffer cimport LineBuffer
from obitools3.dms.obiseq cimport Nuc_Seq