Bug fixes for input handlers, openers, parsers etc. Compiling but not
tested
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@ -6,11 +6,14 @@ Created on 30 mars 2016
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@author: coissac
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'''
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from obitools3.dms.obiseq import Nuc_Seq
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def fastqIterator(lineiterator,
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int skip=0,
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only=None,
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int qualityoffset=-1,
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bool noquality=False,
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bint noquality=False,
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firstline=None,
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int buffersize=100000000
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):
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7
python/obitools3/parsers/universal.pxd
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7
python/obitools3/parsers/universal.pxd
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@ -0,0 +1,7 @@
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#cython: language_level=3
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from ..utils cimport str2bytes
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from ..files.universalopener cimport uopen
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from ..files.linebuffer cimport LineBuffer
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from obitools3.dms.obiseq cimport Nuc_Seq
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