ngsfilter: now setting 'reversed' tag to False instead of None when

false
2020-06-17 18:52:35 +02:00
parent aa01236cae
commit 7593673f3f
1 changed files with 2 additions and 0 deletions
--- a/python/obitools3/commands/ngsfilter.pyx
+++ b/python/obitools3/commands/ngsfilter.pyx
@ -479,6 +479,8 @@ cdef tuple annotate(sequences, infos, no_tags, verbose=False):
    if not directmatch[0].forward:
        sequences[0] = sequences[0].reverse_complement
        sequences[0][b'reversed'] = True   # used by the alignpairedend tool (in kmer_similarity.c)
+    else:
+        sequences[0][b'reversed'] = False   # used by the alignpairedend tool (in kmer_similarity.c)

    sample=None
    if not no_tags: