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ngsfilter: now setting 'reversed' tag to False instead of None when

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false
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Celine Mercier
2020-06-17 18:52:35 +02:00
parent aa01236cae
commit 7593673f3f
1 changed files with 2 additions and 0 deletions
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python/obitools3/commands/ngsfilter.pyx
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@ -479,6 +479,8 @@ cdef tuple annotate(sequences, infos, no_tags, verbose=False):
if not directmatch[0].forward: if not directmatch[0].forward:
sequences[0] = sequences[0].reverse_complement sequences[0] = sequences[0].reverse_complement
sequences[0][b'reversed'] = True # used by the alignpairedend tool (in kmer_similarity.c) sequences[0][b'reversed'] = True # used by the alignpairedend tool (in kmer_similarity.c)
else:
sequences[0][b'reversed'] = False # used by the alignpairedend tool (in kmer_similarity.c)
sample=None sample=None
if not no_tags: if not no_tags: