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Renamed Cython alignment library in an attempt to limit some compilation

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bugs potentially involving name conflicts
This commit is contained in:
Celine Mercier
2018-11-07 16:03:32 +01:00
parent d076ea9900
commit 75a28929a7
19 changed files with 7 additions and 7 deletions
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6
python/obitools3/commands/alignpairedend.pyx
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@ -11,9 +11,9 @@ from obitools3.dms.capi.obitypes cimport OBI_INT, OBI_STR, index_t, OBI_QUAL
from obitools3.apps.optiongroups import addMinimalInputOption, addMinimalOutputOption
from obitools3.uri.decode import open_uri
from obitools3.apps.config import logger
from obitools3.align._qsassemble import QSolexaReverseAssemble
from obitools3.align._qsrassemble import QSolexaRightReverseAssemble
from obitools3.align._solexapairend import buildConsensus, buildJoinedSequence
from obitools3.libalign._qsassemble import QSolexaReverseAssemble
from obitools3.libalign._qsrassemble import QSolexaRightReverseAssemble
from obitools3.libalign._solexapairend import buildConsensus, buildJoinedSequence
from obitools3.dms.obiseq cimport Nuc_Seq_Stored, Nuc_Seq
import sys