trying to fix cython difficulties

2019-03-26 16:19:55 +01:00
parent 14eca43eac
commit 7c2787b6b3
1 changed files with 5 additions and 1 deletions
--- a/python/obitools3/dms/taxo/taxo.pyx
+++ b/python/obitools3/dms/taxo/taxo.pyx
@ -228,7 +228,11 @@ cdef class Taxonomy(OBIWrapper) :


    cpdef write(self, object prefix) :
-        if obi_write_taxonomy(self._dms.pointer(), self.pointer(), tobytes(prefix)) < 0 :
+        cdef DMS dms
+        cdef OBIDMS_p dms_p
+        dms = self._dms
+        dms_p = dms.pointer()
+        if obi_write_taxonomy(dms_p, self.pointer(), tobytes(prefix)) < 0 :
            raise Exception("Error writing the taxonomy to binary files")