Taxonomy: fixed an issue related to StopIteration behaviour in new

versions of python
2024-01-10 15:53:15 +13:00
parent aeed42456a
commit 837ff1a1ba
1 changed files with 4 additions and 3 deletions
--- a/python/obitools3/dms/taxo/taxo.pyx
+++ b/python/obitools3/dms/taxo/taxo.pyx
@ -325,8 +325,9 @@ cdef class Taxonomy(OBIWrapper) :
        cdef Taxon taxon
        try:
            taxon = self.get_taxon_by_taxid(taxid)
-        except:
-            raise StopIteration
+        except Exception as e:
+            print('\n'+e, file=sys.stderr)
+            return 
        if taxon is not None:
            while taxon.taxid != 1:
                yield taxon
@ -334,7 +335,7 @@ cdef class Taxonomy(OBIWrapper) :
                taxon = taxon.parent
            yield taxon
        else:
-            raise StopIteration
+            return


    def is_ancestor(self, int ancestor_taxid, int taxid):