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obi import: fixed bug caused by new behaviour of StopIteration

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exceptions in Python>=3.7
This commit is contained in:
Celine Mercier
2023-09-21 17:47:40 +12:00
parent 791ccfb92e
commit 8a1f844645
3 changed files with 14 additions and 5 deletions
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8
python/obitools3/parsers/fastq.pyx
View File

@ -103,7 +103,11 @@ def fastqWithQualityIterator(lineiterator,
yield seq yield seq
read+=1 read+=1
try:
hline = next(i) hline = next(i)
except StopIteration:
return
def fastqWithoutQualityIterator(lineiterator, def fastqWithoutQualityIterator(lineiterator,
@ -174,5 +178,7 @@ def fastqWithoutQualityIterator(lineiterator,
yield seq yield seq
read+=1 read+=1
try:
hline = next(i) hline = next(i)
except StopIteration:
return

3
python/obitools3/parsers/tab.pyx
View File

@ -99,7 +99,10 @@ def tabIterator(lineiterator,
read+=1 read+=1
try:
line = next(iterator) line = next(iterator)
except StopIteration:
return

2
python/obitools3/version.py
View File

@ -1,5 +1,5 @@
major = 3 major = 3
minor = 0 minor = 0
serial= '1b24' serial= '1b25'
version ="%d.%d.%s" % (major,minor,serial) version ="%d.%d.%s" % (major,minor,serial)