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First version of quality handling (not working yet) and now it is

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checked that a column is writable before enlarging it
This commit is contained in:
Celine Mercier
2016-05-11 16:38:14 +02:00
parent b3c47809da
commit 8ae7644945
8 changed files with 540 additions and 8 deletions
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3
src/obitypes.h
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@ -24,6 +24,8 @@
#define OBIChar_NA (0) /**< NA value for the type OBI_CHAR */ // TODO not sure about this one as it can be impossible to distinguish from uninitialized values
#define OBISeq_NA ("\0") /**< NA value for the type OBI_SEQ */ // TODO discuss
#define OBIStr_NA ("\0") /**< NA value for the type OBI_STR */ // TODO discuss
#define OBIQual_char_NA ("\0") /**< NA value for the type OBI_QUAL if the quality is in character string format */ // TODO test and discuss
#define OBIQual_int_NA ("\0") /**< NA value for the type OBI_QUAL if the quality is in integer format */ // TODO test and discuss
/**
@ -45,6 +47,7 @@ typedef enum OBIType {
OBI_FLOAT, /**< a floating value (C type : double) */
OBI_BOOL, /**< a boolean true/false value, see obibool_t enum */
OBI_CHAR, /**< a character (C type : char) */
OBI_QUAL, /**< an index in a data structure (C type : int64_t) referring to a quality score array */
OBI_STR, /**< an index in a data structure (C type : int64_t) referring to a character string */
OBI_SEQ, /**< an index in a data structure (C type : int64_t) referring to a DNA sequence */
OBI_IDX /**< an index referring to a line in another column (C type : int64_t) */