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Added an argument to specify whether the two sequences can be identical

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when applying filters before aligning
This commit is contained in:
Celine Mercier
2016-11-28 11:38:02 +01:00
parent 3e53f9418b
commit 8ce6f6c80b
2 changed files with 6 additions and 3 deletions
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src/upperband.h
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@ -19,7 +19,7 @@ typedef struct {
Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col);
void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_t idx1, index_t idx2, double threshold, bool normalize, int reference, bool similarity_mode, double* score, int* LCSmin);
void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_t idx1, index_t idx2, double threshold, bool normalize, int reference, bool similarity_mode, double* score, int* LCSmin, bool can_be_identical);
void free_kmer_tables(Kmer_table_p ktable, size_t count);
#endif