grep: now prints the number of entries grepped
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@ -335,14 +335,14 @@ def run(config):
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for i in range(len(i_view)):
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PyErr_CheckSignals()
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pb(i)
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selection.append(i)
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selection.append(i)
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elif filter is not None : # filter is None if no line will be selected because some columns don't exist
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for i in range(len(i_view)):
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PyErr_CheckSignals()
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pb(i)
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line = i_view[i]
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loc_env = {"sequence": line, "line": line, "taxonomy": taxo, "obi_eval_result": False}
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good = filter(line, loc_env)
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@ -358,7 +358,9 @@ def run(config):
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o_view = selection.materialize(o_view_name)
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except Exception, e:
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raise RollbackException("obi grep error, rollbacking view: "+str(e), o_view)
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logger("info", "Grepped %d entries" % len(o_view))
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# Save command config in View and DMS comments
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command_line = " ".join(sys.argv[1:])
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input_dms_name=[input[0].name]
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