obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

Some code refactoring

Browse Source
This commit is contained in:
Celine Mercier
2016-11-09 16:48:00 +01:00
parent 359578814b
commit 8f724f4f8e
3 changed files with 39 additions and 8 deletions
Download Patch File Download Diff File Expand all files Collapse all files

25
src/obidmscolumn.c
View File

@ -660,7 +660,7 @@ OBIDMS_column_p obi_create_column(OBIDMS_p dms,
return NULL; return NULL;
} }
} }
else if ((nb_elements_per_line == 1) && (strcmp(elements_names, column_name) != 0)) else if ((nb_elements_per_line == 1) && (strcmp(elements_names, column_name) != 0)) // TODO Discuss, maybe just make it the column name
{ {
obidebug(1, "\nCan't create column because the element name does not match the column name"); obidebug(1, "\nCan't create column because the element name does not match the column name");
return NULL; return NULL;
@ -1126,6 +1126,29 @@ int obi_close_column(OBIDMS_column_p column)
} }
int obi_clone_column_indexer(OBIDMS_column_p column)
{
char* new_indexer_name;
new_indexer_name = obi_build_indexer_name((column->header)->name, (column->header)->version);
if (new_indexer_name == NULL)
return -1;
column->indexer = obi_clone_indexer(column->indexer, new_indexer_name); // TODO Need to lock this somehow?
if (column->indexer == NULL)
{
obidebug(1, "\nError cloning a column's indexer to make it writable");
return -1;
}
strcpy((column->header)->indexer_name, new_indexer_name);
free(new_indexer_name);
return 0;
}
int obi_truncate_column(OBIDMS_column_p column) // TODO is it necessary to unmap/remap? int obi_truncate_column(OBIDMS_column_p column) // TODO is it necessary to unmap/remap?
{ {
size_t file_size; size_t file_size;

14
src/obidmscolumn.h
View File

@ -237,6 +237,20 @@ OBIDMS_column_p obi_open_column(OBIDMS_p dms, const char* column_name, obiversio
OBIDMS_column_p obi_clone_column(OBIDMS_p dms, OBIDMS_column_p line_selection, const char* column_name, obiversion_t version_number, bool clone_data); OBIDMS_column_p obi_clone_column(OBIDMS_p dms, OBIDMS_column_p line_selection, const char* column_name, obiversion_t version_number, bool clone_data);
/**
* @brief Clones a column indexer to have it writable.
*
* @param column A pointer on an OBIDMS column.
*
* @retval 0 if the operation was successfully completed.
* @retval -1 if an error occurred.
*
* @since November 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_clone_column_indexer(OBIDMS_column_p column);
/** /**
* @brief Truncates a column to the number of lines used if it is not read-only and closes it. * @brief Truncates a column to the number of lines used if it is not read-only and closes it.
* *

8
src/obidmscolumn_str.c
View File

@ -27,7 +27,6 @@
int obi_column_set_obistr_with_elt_idx(OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value) int obi_column_set_obistr_with_elt_idx(OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value)
{ {
index_t idx; index_t idx;
char* new_indexer_name;
if (obi_column_prepare_to_set_value(column, line_nb) < 0) if (obi_column_prepare_to_set_value(column, line_nb) < 0)
return -1; return -1;
@ -44,14 +43,9 @@ int obi_column_set_obistr_with_elt_idx(OBIDMS_column_p column, index_t line_nb,
{ {
if (obi_errno == OBI_READ_ONLY_INDEXER_ERROR) if (obi_errno == OBI_READ_ONLY_INDEXER_ERROR)
{ {
// TODO PUT IN A COLUMN FUNCTION
// If the error is that the indexer is read-only, clone it // If the error is that the indexer is read-only, clone it
new_indexer_name = obi_build_indexer_name((column->header)->name, (column->header)->version); if (obi_clone_column_indexer(column) < 0)
if (new_indexer_name == NULL)
return -1; return -1;
column->indexer = obi_clone_indexer(column->indexer, new_indexer_name); // TODO Need to lock this somehow?
strcpy((column->header)->indexer_name, new_indexer_name);
free(new_indexer_name);
obi_set_errno(0); obi_set_errno(0);
// Add the value in the new indexer // Add the value in the new indexer