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obi uniq: various improvements and fixes #66

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Celine Mercier
2019-08-27 20:27:36 +02:00
parent f5c472ffd1
commit 99a397b842
3 changed files with 77 additions and 55 deletions
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11
src/obiview.h
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@ -57,9 +57,14 @@
*/
#define TAXID_COLUMN "TAXID" /**< The name of the column containing the taxids. TODO subtype of INT column?
*/
#define MERGED_TAXID_COLUMN "merged_TAXID" /**< The name of the column containing the merged taxids information.
*/ // TODO maybe mix of lower and uppercase == bad
#define MERGED_TAXID_COLUMN "MERGED_TAXID" /**< The name of the column containing the merged taxids information.
*/
#define MERGED_PREFIX "MERGED_" /**< The prefix to prepend to column names when merging informations during obi uniq.
*/
#define TAXID_DIST_COLUMN "TAXID_DIST" /**< The name of the column containing a dictionary of taxid:[list of ids] when merging informations during obi uniq.
*/
#define MERGED_COLUMN "MERGED" /**< The name of the column containing a list of ids when merging informations during obi uniq.
*/
#define ID_PREFIX "seq" /**< The default prefix of sequence identifiers in automatic ID columns.
*/
#define PREDICATE_KEY "predicates" /**< The key used in the json-formatted view comments to store predicates.