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Cython API: renamed OBI_Taxonomy to Taxonomy and OBI_Taxon to Taxon

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Celine Mercier
2017-07-27 19:21:45 +02:00
parent fa8f826cdc
commit 99ceed5fff
3 changed files with 17 additions and 17 deletions
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6
python/obitools3/commands/test.pyx
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@ -5,7 +5,7 @@ from obitools3.dms.view.view import View, Line_selection
from obitools3.dms.view.typed_view.view_NUC_SEQS import View_NUC_SEQS
from obitools3.dms.dms import DMS
from obitools3.dms.column import Column
from obitools3.dms.taxo.taxo import OBI_Taxonomy
from obitools3.dms.taxo.taxo import Taxonomy
from obitools3.utils cimport str2bytes
from obitools3.dms.capi.obitypes cimport OBI_INT, \
OBI_FLOAT, \
@ -42,9 +42,9 @@ default_config = {
def test_taxo(config, infos):
tax1 = OBI_Taxonomy.open(infos['dms'], config['obi']['taxo'], taxdump=True)
tax1 = Taxonomy.open(infos['dms'], config['obi']['taxo'], taxdump=True)
tax1.write(TAXTEST)
tax2 = OBI_Taxonomy.open(infos['dms'], TAXTEST, taxdump=False)
tax2 = Taxonomy.open(infos['dms'], TAXTEST, taxdump=False)
assert len(tax1) == len(tax2), "Length of written taxonomy != length of read taxdump : "+str(len(tax2))+" != "+str(len(tax1))
i = 0