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Major update: obiarrays with columns containing indices referring to

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character strings.
This commit is contained in:
Celine Mercier
2015-11-06 17:55:15 +01:00
parent 456551ffeb
commit 9b066f4327
35 changed files with 632 additions and 532 deletions
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8
src/obitypes.h
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@ -19,7 +19,7 @@
#define OBIInt_NA (INT32_MIN) /**< NA value for the type OBI_INT */
#define OBIIdx_NA (SIZE_MAX) /**< NA value for the type OBI_IDX */
#define OBIIdx_NA (INT64_MIN) /**< NA value for indices */
#define OBIFloat_NA (float_NA()) /**< NA value for the type OBI_FLOAT */
#define OBIChar_NA (0) /**< NA value for the type OBI_CHAR */
// TODO not sure about this one as it can be impossible to distinguish from uninitialized values
@ -44,14 +44,14 @@ typedef enum OBIType {
OBI_FLOAT, /**< a floating value (C type : double) */
OBI_BOOL, /**< a boolean true/false value, see obibool_t enum */
OBI_CHAR, /**< a character (C type : char) */
OBI_IDX /**< an index in a data structure (C type : size_t) */
OBI_IDX /**< an index in a data structure (C type : int64_t) */
} OBIType_t, *OBIType_p;
typedef int64_t index_t;
typedef int32_t obiint_t;
typedef double obifloat_t;
typedef char obichar_t;
typedef size_t obiidx_t;
/**
@ -107,7 +107,7 @@ size_t obi_sizeof(OBIType_t type);
* @since May 2015
* @author Eric Coissac (eric.coissac@metabarcoding.org)
*/
size_t obi_array_sizeof(OBIType_t data_type, size_t nb_lines, size_t nb_elements_per_line);
size_t obi_array_sizeof(OBIType_t data_type, index_t nb_lines, index_t nb_elements_per_line);
/**