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openmp on j loop (i loop probably better)

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Celine Mercier
2019-05-24 16:51:04 +02:00
parent ed5bb70c80
commit a04588da31
2 changed files with 25 additions and 9 deletions
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2
python/obitools3/commands/clean.pyx
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@ -101,7 +101,7 @@ def run(config):
comments = View.print_config(config, "clean", command_line, input_dms_name=[i_dms_name], input_view_name=[i_view_name])
if obi_clean(tobytes(i_dms_name), tobytes(i_view_name), tobytes(config['clean']['sample-tag-name']), tobytes(o_view_name), comments, \
config['clean']['distance'], config['clean']['ratio'], config['clean']['heads-only'], 1) < 0:
config['clean']['distance'], config['clean']['ratio'], config['clean']['heads-only'], -1) < 0:
raise Exception("Error running obiclean")
# If the input and output DMS are not the same, export result view to output DMS