import command a bit modified for tests

python/obitools3/commands/import.pyx

@@ -92,9 +92,7 @@ def addOptions(parser):
     
     
 def run(config):
-    #pb = ProgressBar(1000,config,seconde=1)
-    
-    print(config)
+    pb = ProgressBar(35000000,config,seconde=5)
       
     inputs = uopen(config['import']['filename'])
     
@@ -107,6 +105,9 @@ def run(config):
     else:
         raise RuntimeError('No file format specified')
     
+    # Temporary way to handle NA values
+    NA_list = ["nan"]
+    
     # Create DMS
     d = OBIDMS(config['obi']['defaultdms'])
     
@@ -115,17 +116,18 @@ def run(config):
     
     i = 0
     for seq in iseq:
-        #pb(i)
+        pb(i)
         view[i].set_id(seq['id'])
         view[i].set_definition(seq['definition'])
         view[i].set_sequence(seq['sequence'])
-#        for tag in seq['tags'] :
-#            print(tag, seq['tags'][tag])
-#            view[i][tag] = seq['tags'][tag]
+        for tag in seq['tags'] :
+            #print(tag, seq['tags'][tag])
+            #if seq['tags'][tag] not in NA_list :
+            view[i][tag] = seq['tags'][tag]
         i+=1
 
     print(view)
-    print(view.__repr__())
+   # print(view.__repr__())
 
     view.save_and_close()
     d.close()