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Now handling dictionaries with one key

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This commit is contained in:
Celine Mercier
2021-03-10 16:50:30 +13:00
parent fbf0f7dfb6
commit ad1fd3c341
25 changed files with 115 additions and 64 deletions
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12
src/obi_ecotag.c
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@ -104,42 +104,42 @@ int print_assignment_result(Obiview_p output_view, index_t line,
static int create_output_columns(Obiview_p o_view)
{
// Score column
if (obi_view_add_column(o_view, ECOTAG_SCORE_COLUMN_NAME, -1, NULL, OBI_FLOAT, 0, 1, NULL, false, false, false, NULL, NULL, -1, "{}", true) < 0)
if (obi_view_add_column(o_view, ECOTAG_SCORE_COLUMN_NAME, -1, NULL, OBI_FLOAT, 0, 1, NULL, false, false, false, false, NULL, NULL, -1, "{}", true) < 0)
{
obidebug(1, "\nError creating the column for the score in ecotag");
return -1;
}
// Assigned taxid column
if (obi_view_add_column(o_view, ECOTAG_TAXID_COLUMN_NAME, -1, NULL, OBI_INT, 0, 1, NULL, false, false, false, NULL, NULL, -1, "{}", true) < 0)
if (obi_view_add_column(o_view, ECOTAG_TAXID_COLUMN_NAME, -1, NULL, OBI_INT, 0, 1, NULL, false, false, false, false, NULL, NULL, -1, "{}", true) < 0)
{
obidebug(1, "\nError creating the column for the assigned taxid in ecotag");
return -1;
}
// Assigned scientific name column
if (obi_view_add_column(o_view, ECOTAG_NAME_COLUMN_NAME, -1, NULL, OBI_STR, 0, 1, NULL, false, false, false, NULL, NULL, -1, "{}", true) < 0)
if (obi_view_add_column(o_view, ECOTAG_NAME_COLUMN_NAME, -1, NULL, OBI_STR, 0, 1, NULL, false, false, false, false, NULL, NULL, -1, "{}", true) < 0)
{
obidebug(1, "\nError creating the column for the assigned scientific name in ecotag");
return -1;
}
// Assignement status column
if (obi_view_add_column(o_view, ECOTAG_STATUS_COLUMN_NAME, -1, NULL, OBI_BOOL, 0, 1, NULL, false, false, false, NULL, NULL, -1, "{}", true) < 0)
if (obi_view_add_column(o_view, ECOTAG_STATUS_COLUMN_NAME, -1, NULL, OBI_BOOL, 0, 1, NULL, false, false, false, false, NULL, NULL, -1, "{}", true) < 0)
{
obidebug(1, "\nError creating the column for the assignment status in ecotag");
return -1;
}
// Column for array of best match ids
if (obi_view_add_column(o_view, ECOTAG_BEST_MATCH_IDS_COLUMN_NAME, -1, NULL, OBI_STR, 0, 1, NULL, false, true, false, NULL, NULL, -1, "{}", true) < 0)
if (obi_view_add_column(o_view, ECOTAG_BEST_MATCH_IDS_COLUMN_NAME, -1, NULL, OBI_STR, 0, 1, NULL, false, false, true, false, NULL, NULL, -1, "{}", true) < 0)
{
obidebug(1, "\nError creating the column for the array of ids of best matches in ecotag");
return -1;
}
// Column for array of best match taxids
if (obi_view_add_column(o_view, ECOTAG_BEST_MATCH_TAXIDS_COLUMN_NAME, -1, NULL, OBI_INT, 0, 1, NULL, false, true, false, NULL, NULL, -1, "{}", true) < 0)
if (obi_view_add_column(o_view, ECOTAG_BEST_MATCH_TAXIDS_COLUMN_NAME, -1, NULL, OBI_INT, 0, 1, NULL, false, false, true, false, NULL, NULL, -1, "{}", true) < 0)
{
obidebug(1, "\nError creating the column for the array of taxids of best matches in ecotag");
return -1;