Added DMS method to create a DMS if it doesn't already exists, otherwise

opens it
2017-07-28 09:55:43 +02:00
parent da48a9d1af
commit adf5cbef97
3 changed files with 27 additions and 19 deletions
--- a/python/obitools3/commands/import.pyx
+++ b/python/obitools3/commands/import.pyx
@ -147,11 +147,8 @@ def run(config):
    inputs = uopen(config['import']['filename'])

    # Create or open DMS
-    try:
-        d = DMS.test_open(config['obi']['defaultdms'])
-    except :
-        d = DMS.new(config['obi']['defaultdms'])
-
+    d = DMS.open_or_new(config['obi']['defaultdms'])
+    
    get_quality = False
    NUC_SEQS_view = False
    if config['import']['seqinformat']=='fasta':