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clean: hid not implemented option

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This commit is contained in:
mercierc
2021-06-01 09:04:22 +12:00
parent 03c174fd7a
commit b908b581c8
1 changed files with 7 additions and 6 deletions
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11
python/obitools3/commands/clean.pyx
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@ -54,11 +54,11 @@ def addOptions(parser):
default=False, default=False,
help="Only sequences labeled as heads are kept in the output. Default: False") help="Only sequences labeled as heads are kept in the output. Default: False")
group.add_argument('--cluster-tags', '-C', # group.add_argument('--cluster-tags', '-C',
action="store_true", # action="store_true",
dest="clean:cluster-tags", # dest="clean:cluster-tags",
default=False, # default=False,
help="Adds tags for each sequence giving its cluster's head and weight for each sample.") # help="Adds tags for each sequence giving its cluster's head and weight for each sample.")
group.add_argument('--thread-count','-p', # TODO should probably be in a specific option group group.add_argument('--thread-count','-p', # TODO should probably be in a specific option group
action="store", dest="clean:thread-count", action="store", dest="clean:thread-count",
@ -143,3 +143,4 @@ def run(config):
i_dms.close(force=True) i_dms.close(force=True)
logger("info", "Done.") logger("info", "Done.")